| 986. | Mike Flannery | P | FLA | 19 | 9/20/1979 | 6-1 | 205 | R-R | AAA | | Gloucester County College | 12 |
| 987. | Jason Frasor | P | DET | 21 | 8/9/1977 | 5-10 | 170 | R-R | MLB | 2004-2008 | Southern Illinois University | 101 |
| 989. | Billy Keppinger | LF | MIN | 20 | 12/15/1978 | 6-0 | 195 | L-L | AA | | Lake City Community College | 14 |
| 990. | Victor Rosario | OF | MTL | 18 | 12/26/1980 | 5-9 | 175 | L-R | A | - | Sandalwood High School (Jacksonville,FL) | 15 |
| 991. | Mike Clay | SS-C | KC | 22 | 10/3/1976 | 6-0 | 200 | R-R | A | | Southeastern Oklahoma State University | 28 |
| 994. | Chris Schilling | C | MIL | 18 | 1/14/1981 | 5-11 | 192 | R-R | Rookie | | D W Daniel High School (Central,SC) | 3 |
| 995. | Chuck Lopez | CF | SEA | 22 | 11/29/1976 | 6-1 | 195 | L-L | AA | - | Long Beach State University | 106 |
| 997. | James Phillips | P | BAL | 18 | 10/24/1980 | 6-2 | 180 | R-R | Rookie | | Maysville High School (Zanesville,OH) | 1 |
| 999. | Tony Neal | P | CHW | 18 | 9/12/1980 | 6-2 | 205 | R-R | A+ | | Faulkner State Community College | 14 |
| 1000. | Darren Clarke | P | COL | 18 | 3/19/1981 | 6-8 | 235 | R-R | MLB | 2007-2007 | Plant High School (Tampa,FL) | 13 |
| 1004. | Clifton Wren | C | LA | 22 | 4/13/1977 | 6-1 | 220 | R-R | A+ | | Mississippi State University | 106 |
| 1005. | Tony Piazza | C | TEX | 19 | 6/22/1980 | 6-2 | 215 | R-R | AAA | | Fairview High School (Cody,WY) | 1 |
| 1006. | Lionel Rogers | P | NYM | 21 | 10/29/1977 | 5-11 | 170 | R-R | A- | | Freed-Hardeman University (Tenn.) | 5 |
| 1007. | Scott Thomas | C | CLE | 14 | 3/21/1985 | 5-11 | 202 | L-R | A- | | Watervliet High School (Watervliet,MI) | 1 |
| 1012. | Shawn Hill | P | SD | 18 | 4/28/1981 | 6-2 | 185 | R-R | MLB | 2004-2008 | Bishop PF Reding High School (Georgetown,ON) | 1 |