| 1 | 37 | June-Reg | Jason Repko | OF | 18 | 5-11 | 185 | R | R | MLB | 2005-2009 | Hanford (Richland,WA) | $660,000 |
| 2 | 69 | June-Reg | Brennan King | IF | 18 | 6-3 | 180 | R | R | AAA | | Oakland (Mufreesboro,TN) | |
| 2 | 83** | June-Reg | Drew Meyer | SS | 17 | 5-10 | 180 | L | R | MLB | 2006-2006 | Bishop England (Charleston,SC) | |
| 4 | 134 | June-Reg | Joe Thurston | 2B | 19 | 5-11 | 175 | L | R | MLB | 2002-2009 | Sacramento City College | |
| 5 | 164 | June-Reg | Phil Devey | P | 22 | 6-0 | 170 | L | L | AAA | | University of Louisiana at Lafayette | |
| 6 | 194 | June-Reg | Shane Victorino | OF | 18 | 5-9 | 160 | R | R | MLB | 2003-2009 | St. Anthony (Wailuku, HI) | |
| 7 | 224 | June-Reg | Jose Escalera | IF | 18 | 6-3 | 230 | R | R | A | | Carlos Escobar Lopez (Loiza,PR) | |
| 8 | 254 | June-Reg | T.J. Nall | P | 18 | 6-1 | 175 | R | R | AAA | | Schaumburg (Schaumburg,IL) | |
| 9 | 284 | June-Reg | Jon Berry | P | 21 | 6-1 | 190 | R | R | AA | | Newberry College | |
| 10 | 314 | June-Reg | Lamont Matthews | DH | 21 | 6-2 | 210 | L | L | AAA | | Oklahoma State University | |
| 11 | 344 | June-Reg | Eric Junge | P | 22 | 6-5 | 215 | R | R | MLB | 2002-2003 | Bucknell University | |
| 12 | 374 | June-Reg | Josh Dalton | SS | | 6-1 | 177 | B | R | A- | | Louisiana State University | |
| 13 | 404 | June-Reg | Jonathan Hale | C | | | 0 | | | - | | Missouri State University | |
| 14 | 434 | June-Reg | Randy Hadden | P | 21 | 6-2 | 191 | R | R | A+ | | University of South Carolina | |
| 15 | 464 | June-Reg | Wade Parrish | P | 21 | 6-1 | 195 | L | L | AAA | | Washington State University | |
| 16 | 494** | June-Reg | Tymber Lee | P | 21 | 6-2 | 185 | R | R | A- | | Wichita State University | |
| 17 | 524 | June-Reg | Scott Martin | P | 21 | 6-1 | 210 | R | L | A- | | Central Connecticut State University | |
| 18 | 554 | June-Reg | John Rozich | C | | | | | | A- | | Kutztown University | |
| 19 | 584 | June-Reg | Harold Eckert | P | 21 | 6-3 | 218 | R | R | AAA | | Florida International University | |
| 20 | 614** | June-Reg | Ryan Hamilton | P | 16 | 6-2 | 210 | R | R | Ind | | University of San Diego | |
| 21 | 644 | June-Reg | Chris Snow | CF | 18 | 6-1 | 175 | R | R | Rookie | | Desert Vista (Phoenix,AZ) | |
| 22 | 674** | June-Reg | Tim Cunningham | P | 18 | 6-3 | 195 | L | L | A | | Rocklin (Rocklin,CA) | |
| 23 | 704 | June-Reg | Reggie Abercrombie | OF | 17 | 6-3 | 210 | R | R | MLB | 2006-2008 | Columbus (Columbus,GA) | |
| 24 | 734** | June-Reg | Shane Nance | P | 21 | 5-8 | 180 | L | L | MLB | 2002-2004 | University of Houston | |
| 25 | 764** | June-Reg | Clint Chauncey | C | 18 | 6-1 | 180 | R | R | AA | | Terry Parker (Jacksonville,FL) | |
| 26 | 794 | June-Reg | Traviss Hodge | 1B | 18 | | 0 | | | - | | Los Angeles Pierce College | |
| 27 | 824 | June-Reg | Luke Robertson | P | 20 | 6-4 | 220 | R | R | A+ | | Butler Community College | |
| 28 | 854 | June-Reg | Michael Keirstead | P | 18 | 6-0 | 180 | R | R | A+ | | St. Malachy's (Musquash,Can.) | |
| 29 | 884** | June-Reg | Zachary Cates | 1B | 19 | 6-3 | 210 | L | R | A+ | | Mesa Community College | |
| 30 | 914** | June-Reg | Ryan Brnardic | P | 17 | 6-4 | 215 | L | R | Ind | | Sandwich (LaSalle,ON) | |
| 31 | 944** | June-Reg | Justin Glenn | | | | | | | College | | Sheridan (Sheridan,AR) | $0 |
| 32 | 974 | June-Reg | Nolan McManus | P | | 6-8 | 235 | R | R | - | | Sierra College | |
| 33 | 1004 | June-Reg | Clifton Wren | C | 22 | 6-1 | 220 | R | R | A+ | | Mississippi State University | |
| 34 | 1034** | June-Reg | Nom Siriveaw | 3B | 18 | 6-3 | 195 | B | R | A | | Eastern Oklahoma State College | |
| 35 | 1064 | June-Reg | Kegan O'toole | C | | | 0 | | | - | | Jackson (Mill Creek,WA) | |
| 36 | 1094 | June-Reg | Ryan Harris | | | | | | | College | | Woodstock (Woodstock,NB) | |
| 37 | 1124 | June-Reg | Miguel Heredia | P | 19 | 6-4 | 0 | | | - | | Eastern Oklahoma State College | |
| 38 | 1154** | June-Reg | Chris Hunter | P | 18 | 6-4 | 200 | R | R | AAA | | Mountain View (Orem,UT) | |
| 39 | 1184 | June-Reg | Christopher Hanne | P | | | 0 | | | - | | Duluth (Duluth,GA) | |
| 40 | 1214 | June-Reg | Michael Pelsnik | P | | | 0 | | | - | | Horizon (Scottsdale,AZ) | |
| 41 | 1243 | June-Reg | Keith Godbolt | OF | 18 | 6-1 | 190 | R | R | Rookie | | Hillsborough (Tampa,FL) | |
| 42 | 1271** | June-Reg | Rob Harrand | P | 19 | 6-5 | 205 | R | R | A- | | | |
| 43 | 1298** | June-Reg | Kyle Bateman | | | | | | | College | | Coconino (Flagstaff,AZ) | |
| 44 | 1325 | June-Reg | Robert Sumner | 1B | | | 0 | | | - | | Monsignor Pace (Miami,FL) | |
| 45 | 1350** | June-Reg | Erik Lohse | P | 19 | 6-1 | 205 | R | R | AA | | Butte College | |
| 46 | 1374** | June-Reg | Chris Bell | P | 18 | 6-3 | 200 | R | R | Rookie | | Columbus (Miami,FL) | |
| 47 | 1398 | June-Reg | Joey Black | P | | | 0 | | | - | | Bonneville (Ogden,UT) | |
| 48 | 1422 | June-Reg | Scott Wilson | C | 19 | 6-1 | 175 | L | R | - | | Ellensburg (Ellensburg,WA) | |
| 49 | 1445 | June-Reg | Jayson Casiano | 1B | | | 0 | | | - | | Monserrate Leon De Irriza (Cabo Rojo,PR) | |
| 50 | 1466 | June-Reg | Jonathan Morel | 1B | | | 0 | | | - | | Colegio San Agustin (Cabo Rojo,PR) | |
