| 2 | 52 | June-Reg | Matt Belisle | P | 18 | 6-3 | 195 | R | R | MLB | 2003-2009 | McCallum (Austin,TX) | $1,750,000 |
| 3 | 101 | June-Reg | Ryan Langerhans | OF | 18 | 6-3 | 195 | L | L | MLB | 2002-2009 | Round Rock (Round Rock,TX) | |
| 4 | 131 | June-Reg | Johnny McGinnis | P | 18 | 6-3 | 208 | R | R | A- | | Dacula (Dacula,GA) | |
| 5 | 161 | June-Reg | Damien Jones | OF | 18 | 6-2 | 200 | L | L | AA | | Vigor (Prichard,AL) | |
| 6 | 191** | June-Reg | Victor Menocal | SS | 18 | 6-4 | 215 | R | R | A | | Bishop Kenny (Jacksonville,FL) | |
| 7 | 221 | June-Reg | Scott Sobkowiak | P | 20 | 6-5 | 230 | R | R | MLB | 2001-2001 | Northern Illinois University | |
| 8 | 251** | June-Reg | Josh Karp | P | 18 | 6-5 | 210 | R | R | AAA | | Bothell (Bothell,WA) | |
| 9 | 281 | June-Reg | Matt Targac | P | 18 | 6-3 | 210 | B | L | Rookie | | Sacred Heart University | |
| 10 | 311** | June-Reg | Charles Bilezikjian | OF | 17 | 5-11 | 180 | R | R | A | | Port Richmond (Staten Island,NY) | |
| 11 | 341 | June-Reg | L.J. Yankosky | P | | | | | | AAA | | Georgia Tech | |
| 12 | 371 | June-Reg | Greg Donato | OF | 17 | 6-0 | 180 | R | R | A | | Clovis (Clovis,CA) | |
| 13 | 401** | June-Reg | Steve Smyth | P | 20 | 6-1 | 220 | L | L | MLB | 2002-2002 | Cypress College | |
| 14 | 431 | June-Reg | John Ennis | P | 18 | 6-5 | 220 | R | R | MLB | 2002-2007 | Monroe (North Hills,CA) | |
| 15 | 461 | June-Reg | Tommy Clark | | 18 | 6-2 | 205 | R | R | Rookie | | Brunswick (Brunswick,GA) | |
| 16 | 491** | June-Reg | Rob Moravek | | 18 | 6-4 | 205 | R | R | Rookie | | Simsbury (Simsbury,CT) | |
| 17 | 521 | June-Reg | Daniel Curtis | P | 18 | 6-3 | 215 | R | R | AAA | | Central (Chattanooga,TN) | |
| 18 | 551 | June-Reg | Colin Stewart | OF | 21 | 6-1 | 185 | R | R | A+ | | Sonoma State University | |
| 19 | 581 | June-Reg | Zack Frachiseur | | 21 | 6-0 | 190 | R | R | AAA | | University of Georgia | |
| 20 | 611 | June-Reg | Gregg Maluchnik | C | 21 | 6-3 | 200 | R | R | A | | Duke University | |
| 21 | 641 | June-Reg | Aaron Garmong | P | 22 | 5-11 | 180 | L | L | A- | | Wayne State College (Nebraska) | |
| 22 | 671 | June-Reg | Sean Bischofberger | C | 19 | 6-4 | 230 | R | R | Ind | | Granite Hills (El Cajon,CA) | |
| 23 | 701 | June-Reg | Jason Mikels | P | 18 | 6-4 | 185 | R | R | A | | Rio Linda (Rio Linda,CA) | |
| 24 | 731 | June-Reg | Derrick Truitt | P | 20 | 6-1 | 170 | R | R | A+ | | Columbia State Community College | |
| 25 | 761** | June-Reg | Kregg Jarvais | C | 21 | 6-2 | 215 | R | R | A | | University of Maine | |
| 26 | 791 | June-Reg | Joseph Cox | OF | | | 0 | | | - | | Florida State University | |
| 27 | 821 | June-Reg | Bubba Scarce | P | 21 | 5-11 | 188 | R | R | A | | University of North Carolina | |
| 28 | 851 | June-Reg | Louis Angulo | P | | | 0 | | | - | | Miami-Dade College | |
| 29 | 881 | June-Reg | Tim Spooneybarger | P | 18 | 6-3 | 190 | R | R | MLB | 2001-2003 | Pine Forest (Pensacola,FL) | |
| 30 | 911 | June-Reg | Drew James | C | 21 | 5-10 | 215 | R | R | A | | Southeastern Oklahoma State University | |
| 31 | 941 | June-Reg | Tim Lemke | | | | | | | College | | Immaculata (Somerville,NJ) | |
| 32 | 971** | June-Reg | Nick Green | 2B | 19 | 6-0 | 180 | R | R | MLB | 2004-2009 | Georgia Perimeter College | |
| 33 | 1001 | June-Reg | Derek Clifton | P | 18 | 6-3 | 185 | R | R | A- | | Clear Creek (League City,TX) | |
| 34 | 1031 | June-Reg | Paul Burke | C | 20 | 6-2 | 200 | R | R | A- | | Bellarmine University | |
| 35 | 1061 | June-Reg | Marcus Hambrick | OF | 19 | 5-11 | 170 | L | L | A- | | Robert E. Lee (Montgomery,AL) | |
| 36 | 1091** | June-Reg | Phil Rosengren | P | 21 | 6-5 | 210 | R | R | A | | Northwestern University | |
| 37 | 1121 | June-Reg | Adrian Walker | P | 18 | | 0 | | | Rookie | | Mission Bay (San Diego,CA) | |
| 38 | 1151 | June-Reg | Kevin Benson | OF | | | 0 | | | - | | Century (Bismarck,ND) | |
| 39 | 1181 | June-Reg | Casey Cheshier | 3B | 21 | 6-3 | 190 | R | R | A- | | San Jose State University | |
| 40 | 1211 | June-Reg | Jerod Simmons | OF | 22 | 6-0 | 195 | R | R | AA | | The Citadel | |
| 41 | 1241 | June-Reg | Mike Perez | P | 33 | 6-0 | 187 | R | R | MLB | 1990-1997 | Palm Beach (West Palm Beach,FL) | |
| 42 | 1270 | June-Reg | Eric Wise | P | 18 | 6-2 | 185 | R | R | Rookie | | Basic (Henderson,NV) | |
| 43 | 1298 | June-Reg | Gregory Birch | | | | | | | College | | McArthur (Hollywood,FL) | |
| 44 | 1323** | June-Reg | Dallas McPherson | IF | 17 | 6-4 | 210 | L | R | MLB | 2004-2008 | Randleman (Randleman,NC) | |
| 45 | 1348 | June-Reg | Brad Voyles | P | 21 | 6-0 | 195 | R | R | MLB | 2001-2003 | Luxemburg-Casco (Luxemburg,WI) | |
| 46 | 1370** | June-Reg | Josh Carter | OF | 17 | 6-2 | 210 | R | R | AA | - | Fallbrook (Fallbrook,CA) | |
| 47 | 1391** | June-Reg | Mike Gleason | P | | | 0 | | | - | | Santa Fe Trail (Carbondale,KS) | |
| 48 | 1411 | June-Reg | Jason King | SS | 18 | 6-0 | 175 | R | R | Rookie | | Englewood (Jacksonville,FL) | |
| 49 | 1428 | June-Reg | Micah Noda | | | | | | | College | | Columbia (Lake City,FL) | |
| 50 | 1443 | June-Reg | Shaun Harper | OF | 18 | 6-1 | 175 | R | R | A- | | Frederick Douglass (Atlanta,GA) | |