| 4 | 132 | June-Reg | Josh Pressley | IF | 18 | 6-6 | 231 | L | R | AAA | - | Westminster Academy (Fort Lauderdale,FL) | |
| 5 | 162 | June-Reg | Aubrey Huff | 3B | 21 | 6-4 | 220 | L | R | MLB | 2000-2009 | University of Miami | |
| 6 | 192 | June-Reg | Ryan Rupe | P | 23 | 6-5 | 230 | R | R | MLB | 1999-2003 | Texas A&M University | |
| 7 | 222 | June-Reg | John Jacobs | 3B | 18 | 6-1 | 195 | R | R | A+ | | Marin Catholic (Kentfield,CA) | |
| 8 | 252 | June-Reg | Joe Kennedy | P | 19 | 6-4 | 225 | R | L | MLB | 2001-2007 | Grossmont College | |
| 9 | 282 | June-Reg | Brian Martin | OF | 18 | 6-2 | 217 | L | R | AAA | | Central Union (El Centro,CA) | |
| 10 | 312** | June-Reg | Ben Keiter | P | 18 | 6-3 | 210 | R | R | A+ | | | |
| 11 | 342 | June-Reg | Steven Goodson | OF | 19 | 6-5 | 210 | L | R | A+ | | Cowley College | |
| 12 | 372 | June-Reg | Adam Flohr | P | 21 | 6-0 | 185 | L | L | AAA | | Portland State University | |
| 13 | 402 | June-Reg | Patrick Dickson | P | 18 | 6-2 | 200 | L | L | Rookie | | Dalton (Dalton,GA) | |
| 14 | 432 | June-Reg | Patrick Hertzel | P | 21 | 6-5 | 200 | R | R | A | | Kansas State University | |
| 15 | 462 | June-Reg | Charles Armstrong | P | 21 | 6-4 | 210 | L | L | Ind | | Contra Costa College | |
| 16 | 492 | June-Reg | Neal Frendling | P | 18 | 6-3 | 194 | R | R | AAA | | Lake Central (St. John,IN) | |
| 17 | 522** | June-Reg | Mike Rodriguez | OF | 17 | 5-10 | 162 | L | L | AAA | | Cooper City (Cooper City,FL) | |
| 18 | 552 | June-Reg | Brandon Backe | P | 20 | 6-0 | 185 | R | R | MLB | 2002-2009 | Galveston College | |
| 19 | 582 | June-Reg | Arthur Garland | OF | | | 0 | | | - | | Santa Ana College | |
| 20 | 612** | June-Reg | Preston Larrison | P | 17 | 6-4 | 215 | R | R | AAA | | West (Aurora,IL) | |
| 21 | 642** | June-Reg | Darin Moore | P | 21 | 6-0 | 195 | R | R | AA | | University of the Pacific | |
| 22 | 672 | June-Reg | Dan Grummitt | IF | 22 | 6-5 | 233 | R | R | AAA | | Shawnee State University | |
| 23 | 702 | June-Reg | Frank Moore | 2B | 19 | 6-2 | 206 | L | R | AAA | | Middle George (Douglas,GA) | |
| 24 | 732** | June-Reg | Ryan Jorgensen | C | 19 | 6-2 | 200 | R | R | MLB | 2005-2008 | San Jacinto College | |
| 25 | 762 | June-Reg | Talley Haines | P | 21 | 6-5 | 203 | R | R | AAA | | Freed Hardem (Cape Giardeau,MO) | |
| 26 | 792 | June-Reg | George Moran | | | | | | | College | | Red Bluff (Red Bluff,CA) | |
| 27 | 822 | June-Reg | James Lira | P | 21 | 6-1 | 160 | R | R | AA | | Laredo Community College | |
| 28 | 852 | June-Reg | Chadwick Cossette | C | | | 0 | | | - | | Edmonds Community College | |
| 29 | 882 | June-Reg | Jeremy Manning | P | | | 0 | | | - | - | Pitt Community College | |
| 30 | 912 | June-Reg | Gary Welch | P | | | 0 | | | - | | Howard College | |
| 31 | 942** | June-Reg | Chris Wailand | | | | | | | College | | Manatee (Bradenton,FL) | |
| 32 | 972 | June-Reg | Sean Mahoney | OF | 22 | 6-4 | 220 | R | R | A+ | | Florida International University | |
| 33 | 1002 | June-Reg | Rudolph Frolish | P | | | 0 | | | - | | Ansonia (Ansonia,CT) | |
| 34 | 1032 | June-Reg | Matthew Schuldt | P | 22 | 6-2 | 205 | R | R | A+ | | University of Nebraska | |
| 35 | 1062 | June-Reg | Monte MacGillivray | P | 21 | 6-0 | 190 | L | L | Rookie | | Mt. San Jacinto College | |
| 36 | 1092** | June-Reg | Tim Olson | SS | 19 | 6-2 | 200 | R | R | MLB | 2004-2005 | Hutchinson (Bismarck,ND) | |
| 37 | 1122** | June-Reg | Brandon Medders | P | 18 | 6-2 | 185 | R | R | MLB | 2005-2009 | Hillcrest (Tuscaloosa,AL) | |
| 38 | 1152 | June-Reg | Andrew Cook | P | 17 | | 0 | | | - | | | |
| 39 | 1182 | June-Reg | Edwin Rodriguez | IF | 37 | 5-11 | 175 | R | R | MLB | 1982-1985 | Ponce High (Ponce,PR.) | |
| 40 | 1212 | June-Reg | Michael McCuan | P | | | 0 | | | - | | Butler Community College | |
| 41 | 1242** | June-Reg | Jeff Bruksch | P | 18 | 6-4 | 215 | R | R | AAA | | | |
| 42 | 1271 | June-Reg | Dane Hutchens | P | | | 0 | | | - | | McLennan Community College | |
| 43 | 1299** | June-Reg | Brandon Culp | P | 20 | 6-6 | 240 | R | R | AA | | Wallace Community College | |
| 44 | 1324** | June-Reg | Mark Carter | P | 18 | 6-4 | 220 | L | L | A+ | | Hewitt-Trussville (Trussville,AL) | |
| 45 | 1349 | June-Reg | Harold Godeill | OF | | | 0 | | | - | | Modesto Junior College | |
| 46 | 1371 | June-Reg | Cody Getz | P | 19 | 6-8 | 200 | L | L | A- | | College of Eastern Utah | |
| 47 | 1392 | June-Reg | Lee Stephens | 1B | | | 0 | | | - | | Stetson University | |
| 48 | 1412** | June-Reg | Mike Jacobs | C | 17 | 6-2 | 200 | L | R | MLB | 2005-2009 | Hilltop (Chula Vista,CA) | |
| 49 | 1429** | June-Reg | Justin Hancock | OF | 18 | 6-2 | 190 | R | R | A | | Bloomingdale (Valrico,FL) | |
| 50 | 1444 | June-Reg | Luis Mateo | OF | 16 | 6-2 | 190 | R | R | AA | | Hill College | |