| 1 | 5 | June-Reg | J.D. Drew | OF | 22 | 6-1 | 195 | L | R | MLB | 1998-2009 | | $3,000,000 |
| 1 | 32** | June-Reg | Ben Diggins | P | 19 | 6-7 | 230 | R | R | MLB | 2002-2002 | Bradshaw Mountain (Prescott Valley,AZ) | |
| 2 | 48 | June-Reg | Chad Hutchinson | P | 21 | 6-5 | 230 | R | R | MLB | 2001-2001 | Stanford University | $2,300,000 |
| 2 | 55 | June-Reg | Tim Lemon | OF | 17 | 6-1 | 180 | R | R | A+ | | La Mirada (La Mirada,CA) | $650,000 |
| 3 | 78 | June-Reg | Gabe Johnson | IF | 18 | 6-1 | 195 | R | R | AAA | | Atlanta Community (Delray Beach,Fl) | |
| 4 | 108** | June-Reg | Robert Smith | OF | | | 0 | | | - | | UCLA | |
| 5 | 138 | June-Reg | Steve Stemle | P | 21 | 6-4 | 200 | R | R | MLB | 2005-2006 | Western Kentucky University | |
| 6 | 168** | June-Reg | Chris Rayborn | P | 14 | 6-3 | 200 | R | R | Ind | | Purvis (Purvis,MS) | |
| 7 | 198 | June-Reg | Brad Freeman | SS | 22 | 6-2 | 210 | R | R | A+ | | University of Mississippi | |
| 8 | 228 | June-Reg | Greg Clark | C | 21 | 6-2 | 180 | R | R | A+ | | University of Arizona | |
| 9 | 258 | June-Reg | Jack Wilson | SS | 20 | 6-0 | 175 | R | R | MLB | 2001-2009 | Oxnard College | |
| 10 | 288 | June-Reg | Pedro Zazueta | P | | | 0 | | | Rookie | | Amphitheater (Tucson,AZ) | |
| 11 | 318 | June-Reg | Joel Vega | P | | | 0 | | | - | | Ohio Dominican University | |
| 12 | 348** | June-Reg | Jeff Waldron | C | 21 | 6-1 | 205 | L | R | AAA | | Boston College | |
| 13 | 378 | June-Reg | Les Walrond | P | 21 | 6-0 | 195 | L | L | MLB | 2003-2008 | University of Kansas | |
| 14 | 408 | June-Reg | Jason Bowers | SS | 20 | 5-11 | 170 | R | R | AAA | | Gulf Coast Community College | |
| 15 | 438 | June-Reg | Pedro Hernandez | DH | 39 | 6-1 | 160 | R | R | MLB | 1979-1982 | Xaverian (Brooklyn,NY) | |
| 16 | 468 | June-Reg | Scott Prather | P | 21 | 6-2 | 185 | L | L | AA | | Georgia Tech | |
| 17 | 498 | June-Reg | Michael Gargano | P | 19 | 6-2 | 200 | R | R | A+ | | Dixie State College of Utah | |
| 18 | 528 | June-Reg | Esix Snead | OF | 22 | 5-10 | 175 | B | R | MLB | 2002-2004 | University of Central Florida | |
| 19 | 558 | June-Reg | Travis Held | P | 21 | 6-3 | 215 | R | R | A+ | | University of Central Florida | |
| 20 | 588 | June-Reg | Chris Kelly | 3B | 21 | 6-3 | 210 | R | R | A | | Catawba College. | |
| 21 | 618 | June-Reg | James Molina | OF | 22 | 6-1 | 210 | R | R | A- | | Florida International University | |
| 22 | 648 | June-Reg | Michael Rerick | P | | | 0 | | | - | | University of North Dakota | |
| 23 | 678 | June-Reg | Andy Shibilo | P | 21 | 6-7 | 220 | R | R | AAA | | Pepperdine University | |
| 24 | 708 | June-Reg | Richard Gonzales | P | 23 | 6-1 | 205 | R | R | A+ | | University of New Mexico | |
| 25 | 738 | June-Reg | Jon Hand | P | 22 | 6-2 | 200 | R | R | A | | Virginia Tech | |
| 26 | 768 | June-Reg | Steve Parker | | | | | | | College | | Key West (Key West,FL) | |
| 27 | 798** | June-Reg | Ryan Christianson | C | 17 | 6-2 | 210 | R | R | AAA | | University of Nebraska | |
| 28 | 828 | June-Reg | Jason Marr | P | 22 | 6-1 | 195 | R | R | AA | - | Long Beach State University | |
| 29 | 858 | June-Reg | Jeff Viles | P | 22 | 6-2 | 220 | R | R | A | | Rockhurst University | |
| 30 | 888 | June-Reg | Eric Gutshall | P | 22 | 6-5 | 225 | R | R | A- | | Yale University | |
| 31 | 918 | June-Reg | Troy Mcnaughton | OF | 23 | 6-0 | 195 | L | L | AAA | | Brigham Young University | |
| 32 | 948 | June-Reg | Troy Farnsworth | IF | 22 | 6-2 | 200 | R | R | AA | | Brigham Young University | |
| 33 | 978 | June-Reg | Tommy Kidwell | 2B | 21 | 5-9 | 175 | R | R | A+ | | Yale University | |
| 34 | 1008 | June-Reg | Kyle Boyer | SS | 18 | 6-0 | 180 | R | R | A | | Bonneville (Ogden,UT) | |
| 35 | 1038** | June-Reg | Dustin Hawkins | OF | 18 | 6-0 | 185 | L | L | A | | Bonneville (Ogden,UT) | |
| 36 | 1068 | June-Reg | Andrew Ecklund | C | | | 0 | | | - | | Cal Poly | |
| 37 | 1098** | June-Reg | Brent Cordell | C | 18 | 6-3 | 210 | B | R | A+ | | Incline (Incline Village,NV) | |
| 38 | 1128 | June-Reg | Seth Jerue | | | | | | | College | | Westfield (Westfield,MA) | |
| 39 | 1158** | June-Reg | Vic Buttler | OF | 17 | 6-0 | 169 | L | L | AAA | | Westchester (Los Angeles,CA) | |
| 40 | 1188 | June-Reg | Scott Neal | OF | | | 0 | | | - | | Bakersfield North (Bakersfield,CA) | |
| 41 | 1218** | June-Reg | Justin Knoedler | P | 17 | 6-2 | 205 | R | R | MLB | 2004-2006 | Springfield (Springfield,IL) | |
| 42 | 1248 | June-Reg | Brandon Tisher | 1B | | | 0 | | | - | | Durango (Durango,CO) | |
| 43 | 1276 | June-Reg | Scott Sorensen | P | | | 0 | | | - | | Fruita Monument (Grand Junction,CO) | |
| 44 | 1302 | June-Reg | Matt Harvick | | | | | | | College | | Bakersfield North (Bakersfield,CA) | |
| 45 | 1327 | June-Reg | Matt Van Alsburg | | | | | | | College | | Fort Collins (Fort Collins,CO) | |