| # | Player Name | Pos | Team | Age | Born | Ht | Wt | B-T | High Level | MLB Years | Drafted From | # |
| 985. | Joel Greene | p | DET | 21 | 5/18/1976 | 6-2 | 185 | L-L | A- | | William Penn University (Iowa) | 7 |
| 986. | Eddie Fitzpatrick | C | PHI | 22 | 2/21/1975 | 6-2 | 215 | R-R | A- | | Freed-Hardeman University (Tenn.) | 1 |
| 987. | Eric Easton | p | ANA | 18 | 3/6/1979 | 6-7 | 220 | R-R | Ind | | East Lake High School (Tarpon Springs,FL) | 7 |
| 988. | Mike Stevenson | p | SF | 20 | 9/21/1976 | 6-3 | 195 | R-R | - | | Orange County Community College | 110 |
| 989. | Taylor Smith | p | TOR | 18 | 12/15/1978 | 6-3 | 195 | R-R | A+ | | Green Valley High School (Henderson,NV) | 11 |
| 990. | Shaun Mikkola | p | NYM | 17 | 8/3/1979 | 6-1 | 190 | R-R | Rookie | | Largo High School (Largo,FL) | 4 |
| 991. | Nelson Bellido | p | KC | | | | | - | - | | | |
| 992. | Bill White | p | PIT | 18 | 11/20/1978 | 6-3 | 210 | L-L | MLB | 2007-2007 | Benjamin Russell High School (Alexander City,AL) | 1 |
| 993. | Nick Punto | SS | MIN | 19 | 11/8/1977 | 5-9 | 170 | B-R | MLB | 2001-2008 | Saddleback College | 37 |
| 994. | Ryan McKinley | p | CHC | 18 | 11/14/1978 | 6-3 | 200 | R-R | Rookie | | Scottsdale Community College | 41 |
| 995. | Ian Perio | p | OAK | 19 | 5/11/1978 | 5-11 | 180 | L-L | A- | | Laney College | 86 |
| 996. | Ronald Dorsey | Of | FLA | | | | | - | - | | Hammonton High School (Hammonton,NJ) | 1 |
| 997. | Arthur Garland | p | MIL | | | | 0 | - | - | | Magnolia High School (Anaheim,CA) | 12 |
| 998. | Chad Rogers | p | CIN | | | | | - | - | | Pine Forest High School (Pensacola,FL) | 6 |
| 999. | Mark Floersch | p | CHW | | | | | - | - | | New Trier High School (Winnetka,IL) | 4 |
| 1000. | Lamont Matthews | Of | HOU | 19 | 6/15/1978 | 6-2 | 210 | L-L | AAA | | Kishwaukee Community College | 27 |
| 1001. | Pat Santoro | SS | BOS | 18 | 11/9/1978 | 6-0 | 195 | R-R | A+ | | Fenwick High School (Oak Park,IL) | 3 |
| 1002. | Cody Trask | p | COL | 19 | 3/19/1978 | 6-3 | 205 | R-R | Rookie | | Riverside Community College | 51 |
| 1003. | Cordell Lindsey | 3B | SEA | 19 | 3/8/1978 | 6-1 | 190 | R-R | A | | Blinn College | 110 |
| 1004. | Blake Ledbetter | C | STL | 20 | 3/9/1977 | 6-2 | 210 | R-R | Rookie | | | |
| 1005. | Andy Beal | p | BAL | 18 | 10/31/1978 | 6-2 | 185 | L-L | AAA | | Reidland High School (Paducah,KY) | 1 |
| 1006. | Brandt Hayden | SS | MTL | | | | | - | - | | South Salem High School (Salem,OR) | 3 |
| 1007. | Mitch Jones | 3B | TEX | 19 | 10/15/1977 | 6-1 | 215 | R-R | Intl | | Utah Valley State College | 1 |
| 1008. | Shaun Benzor | p | LA | 18 | 4/5/1979 | 6-2 | 210 | L-L | - | | Redlands High School (Redlands,CA) | 5 |
| 1009. | Carlos Arvizu | 1B | NYY | | | 6-6 | 220 | L-L | - | | Tucson High School (Tucson,AZ) | 15 |
| 1010. | Chad Olszanski | SS | SD | | | | | - | - | | San Pasqual High School (Escondido,CA) | 2 |
| 1011. | Anthony Jackson | Of | CLE | | | | | - | - | | Wilde Lake High School (Ellicott City,MD) | 1 |
| 1012. | Craig Carter | SS | ATL | 18 | 1/25/1979 | | | - | - | | Lake Havasu High School (Lake Havasu,AZ) | 4 |
| 1013. | Lance Downing | 3B | ARI | 18 | 3/9/1979 | 5-11 | 185 | L-R | A | | Watson Chapel High School (Pine Bluff,AR) | 3 |
| 1014. | Dan Firlit | SS | TB | 18 | 11/22/1978 | 6-1 | 195 | R-R | AA | | Rend Lake College | 10 |
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