| 1 | 27 | June-Reg | A.J. Zapp | 1B | 18 | 6-3 | 190 | L | R | AAA | | | $650,000 |
| 1 | 35 | June-Reg | Jason Marquis | P | 17 | 6-1 | 185 | L | R | MLB | 2000-2009 | Tottenville (Staten Island,NY) | $600,000 |
| 2 | 62** | June-Reg | Eric Munson | OF | 18 | 6-3 | 220 | L | R | MLB | 2000-2009 | Mount Carmel (San Diego,CA) | |
| 3 | 92 | June-Reg | Junior Brignac | OF | 18 | 6-3 | 175 | R | R | AA | | Cleveland (Reseda,CA) | |
| 4 | 122 | June-Reg | Joe Nelson | P | 21 | 6-2 | 185 | R | R | MLB | 2001-2009 | University of San Francisco | |
| 5 | 152 | June-Reg | Josh Pugh | C | 18 | 6-0 | 200 | R | R | A+ | | Henry Clay (Lexington,KY) | |
| 6 | 182 | June-Reg | Shawn Onley | P | 21 | 6-5 | 190 | R | R | A+ | | Rice University | |
| 7 | 212 | June-Reg | Mark DeRosa | 3B | 21 | 6-1 | 190 | R | R | MLB | 1998-2009 | University of Pennsylvania | |
| 8 | 242 | June-Reg | A.D. Thorpe | SS | 19 | 5-11 | 160 | B | R | A | | Southern (Durham,NC) | |
| 9 | 272 | June-Reg | Nathan Harden | P | 18 | 6-2 | 185 | R | R | Ind | | Dripping Springs (Dripping Springs,TX) | |
| 10 | 302 | June-Reg | Winston Lee | P | 19 | 6-5 | 210 | R | R | Rookie | | Glendale Community College | |
| 11 | 332 | June-Reg | Aaron Taylor | P | 18 | 6-5 | 205 | R | R | MLB | 2002-2004 | | |
| 12 | 362 | June-Reg | Greg Ward | OF | 18 | 6-5 | 215 | R | R | A+ | | Avon (Avon,CT) | |
| 13 | 392 | June-Reg | Jason Ross | OF | 22 | 6-4 | 215 | R | R | AAA | | University of Hawaii | |
| 14 | 422 | June-Reg | John Arkire | p | | | | | | - | | University of Tennessee | |
| 15 | 452 | June-Reg | Mike Hessman | 1B-p | 18 | 6-5 | 215 | R | R | MLB | 2003-2008 | Mater Dei (Santa Ana,CA) | |
| 16 | 482 | June-Reg | Ray Beasley | p | 19 | 5-11 | 168 | R | L | AAA | | Lake City Community College | |
| 17 | 512 | June-Reg | Dana Davis | p | | | | | | - | | Rice University | |
| 18 | 542 | June-Reg | Donald Ceasar | p | 17 | 6-6 | 197 | R | R | Rookie | | Lake Charles (Lake Charles,LA) | |
| 19 | 572 | June-Reg | Adam Milburn | p | 22 | 6-1 | 195 | R | L | AA | | University of Kentucky | |
| 20 | 602 | June-Reg | John Arnold | C | 21 | 6-0 | 185 | R | R | A | | Eastern New Mexico University | |
| 21 | 632 | June-Reg | Jesse Crespo | C | 18 | 6-3 | 200 | R | R | Rookie | | | |
| 22 | 662** | June-Reg | Aaron Melebeck | SS | 18 | 5-11 | 175 | R | R | A- | | Clear Brook (Friendswood,TX) | |
| 23 | 692 | June-Reg | Dax Norris | C | 23 | 5-10 | 190 | R | R | AAA | | University of Alabama | |
| 24 | 722** | June-Reg | Pat Collins | p | 18 | 6-5 | 230 | R | R | AA | | Union (Union,NJ) | |
| 25 | 752 | June-Reg | Anthony Brooks | SS | 19 | 6-0 | 195 | R | R | A | | Gulf Coast Community College | |
| 26 | 782 | June-Reg | Jason Katz | SS | 22 | 5-10 | 180 | B | R | AA | | New Mexico Junior College | |
| 27 | 812 | June-Reg | Aaron Strangfeld | 1B | 18 | 6-1 | 215 | B | R | A- | | Grossmont College | |
| 28 | 842 | June-Reg | Miguel Garcia | p | | | | | | - | | Cerritos College | |
| 29 | 872 | June-Reg | Galen Reeder | p | 18 | 6-2 | 194 | L | L | Rookie | | Georgia Perimeter College | |
| 30 | 902 | June-Reg | Fred Sanchez | SS | | | | | | - | | Burbank (Burbank,CA) | |
| 31 | 932 | June-Reg | Adam Love | p | | | | | | - | | Westlake (Austin,TX) | |
| 32 | 962** | June-Reg | Dustin Franklin | p | | | | | | - | | Permian (Odessa,TX) | |
| 33 | 992 | June-Reg | Jerrod Wong | 1B | 22 | 6-3 | 200 | L | L | A+ | | Gonzaga University | |
| 34 | 1022 | June-Reg | Adam Springston | p | 18 | 6-6 | 228 | R | R | A- | | Oxnard College | |
| 35 | 1052 | June-Reg | Byron Embry | p | 19 | 6-2 | 240 | R | R | AAA | | Indian Hills Community College-Centerville | |
| 36 | 1082 | June-Reg | Scott Frawley | Of | 18 | 6-1 | 205 | R | R | Rookie | | South Suburban College | |
| 37 | 1112 | June-Reg | Hunter Wenzel | p | | | | | | - | | Boerne (Boerne,TX) | |
| 38 | 1142 | June-Reg | Randy Phillips | p | 19 | 6-2 | 180 | L | L | Rookie | | Olney Central College | |
| 39 | 1172 | June-Reg | Jeff Lindemann | p | 18 | 6-4 | 185 | R | R | Rookie | | Andrew (Tinley Park,IL) | |
| 40 | 1202 | June-Reg | Anthony Barrow | 1B | | | | | | - | | Blazer (Ashland,KY) | |
| 41 | 1230 | June-Reg | Justin Willoughby | p | 18 | 6-3 | 170 | L | L | AAA | | Princeton (Princeton,NC) | |
| 42 | 1258 | June-Reg | George Snead | p | 22 | 6-3 | 210 | R | R | A | | Albany State University | |
| 43 | 1285 | June-Reg | Cory Simpson | p | 18 | 6-5 | 215 | R | R | A | | Sumner (Kentwood,LA) | |
| 44 | 1311 | June-Reg | Nathan Fernley | p | 19 | 6-3 | 160 | R | R | A+ | | Long Beach City College | |
| 45 | 1336 | June-Reg | John Zydowsky | SS | 18 | 5-11 | 170 | R | R | Rookie | | Portage (Pardeeville,WI) | |
| 46 | 1361 | June-Reg | Joe Holzbauer | p | 18 | 6-2 | 185 | R | R | Rookie | | Palomar College | |
| 47 | 1385 | June-Reg | Patrick Fuentes | SS | | | | | | - | | Logan (Union City,CA) | |
| 48 | 1408** | June-Reg | Greg Dukeman | p | 17 | 6-8 | 238 | R | R | A+ | | Millikan (Long Beach,CA) | |
| 49 | 1431 | June-Reg | Michael Jones | p | 23 | 6-0 | 187 | B | R | A+ | | University of California-Riverside | |
| 50 | 1454 | June-Reg | Travis Richo | of | | | | | | - | | Fernandina Beach (Fernandina Beach,FL) | |
| 51 | 1475** | June-Reg | Daniel Bell | of | | | | | | - | | University (Los Angeles,CA) | |
| 52 | 1494 | June-Reg | Brett Pierce | SS | | | | | | A- | | Citrus College | |
| 53 | 1511 | June-Reg | Marcus Giles | 2B | 18 | 5-8 | 180 | R | R | MLB | 2001-2007 | Granite Hills (El Cajon,CA) | |
| 54 | 1527 | June-Reg | Jeff Champion | of | 20 | 6-3 | 215 | R | R | Rookie | | Florida Memorial University | |
| 55 | 1543** | June-Reg | Adam Johnson | of | 16 | 6-2 | 210 | R | R | MLB | 2001-2003 | University of Central Florida | |
| 56 | 1558 | June-Reg | Bradley Green | SS | | | | | | - | | South Pittsburg (Pittsburg,TN) | |
| 57 | 1569 | June-Reg | Juan Galban | p | | | | | | - | | | |
| 58 | 1579 | June-Reg | Baylor Moore | p | | | | | | - | | Friendswood (Friendswood,TX) | |
| 59 | 1589 | June-Reg | Hector Gonzales | C | | | | | | - | | Scottsdale Community College | |
| 60 | 1598** | June-Reg | Ray Plummer | p | 20 | 5-11 | 190 | L | L | A | | Point Loma Nazarene University | |