| 1 | 15 | June-Reg | Andy Yount | P | 18 | 6-2 | 185 | R | R | A+ | | Kingwood (Kingwood,TX) | $986,000 |
| 1 | 24 | June-Reg | Corey Jenkins | OF | 18 | 6-2 | 200 | R | R | AA | | Dreher (Columbia,SC) | $575,000 |
| 2 | 45 | June-Reg | Jose Olmeda | SS | 17 | 6-1 | 170 | R | R | A+ | | | $225,000 |
| 3 | 74 | June-Reg | Jay Yennaco | P | 19 | 6-1 | 230 | R | R | AAA | | Pinkerton Academy (Derry,NH) | |
| 4 | 102 | June-Reg | Mike Spinelli | P | 18 | 6-3 | 205 | L | L | A+ | | Revere (Revere,MA) | |
| 5 | 130 | June-Reg | Steve Lomasney | C | 17 | 6-0 | 195 | R | R | MLB | 1999-1999 | Peabody (Peabody,MA) | |
| 6 | 158 | June-Reg | Matt Kinney | P | 18 | 6-5 | 220 | R | R | MLB | 2000-2005 | Bangor (Bangor,ME) | |
| 7 | 186 | June-Reg | Cole Liniak | SS | 18 | 6-1 | 182 | R | R | MLB | 1999-2000 | San Dieguito (Encinitas,CA) | |
| 8 | 214 | June-Reg | Luis Cardona | C | 17 | 6-1 | 198 | R | R | Rookie | | | |
| 9 | 242 | June-Reg | Paxton Crawford | P | 17 | 6-3 | 205 | R | R | MLB | 2000-2001 | | |
| 10 | 270 | June-Reg | Kevie Austin | P | 21 | 6-0 | 185 | R | R | A- | | Emmanuel College | |
| 11 | 298 | June-Reg | Jeff Sauve | P | 22 | 6-1 | 200 | R | R | A | | Clemson University | |
| 12 | 326 | June-Reg | Jim Chamblee | SS | 20 | 6-4 | 175 | R | R | MLB | 2003-2003 | Odessa College | |
| 13 | 354 | June-Reg | Andy Noffke | p | 21 | 6-6 | 220 | R | R | A | | Ohio State University | |
| 14 | 382** | June-Reg | Andrew Beinbrink | 3B | 18 | 6-3 | 212 | R | R | AAA | | Scripps Ranch (San Diego,CA) | |
| 15 | 410 | June-Reg | Kevan Cannon | p | 20 | 6-3 | 215 | L | L | AA | | Ohio State University | |
| 16 | 438 | June-Reg | Rontrez Johnson | OF | 18 | 5-10 | 160 | R | R | MLB | 2003-2003 | Marshall (Marshall,TX) | |
| 17 | 466 | June-Reg | Bobby Rodgers | p | 20 | 6-3 | 225 | R | R | AAA | | Wake Forest University | |
| 18 | 494 | June-Reg | Felipe Roman | OF | 16 | 6-3 | 199 | R | R | Rookie | | | |
| 19 | 522 | June-Reg | Ben Stallings | p | 18 | 6-1 | 200 | R | R | Rookie | | Apollo (Owensboro,KY) | |
| 20 | 550 | June-Reg | Dwight Ferguson | OF | 18 | 6-1 | 170 | L | L | A | | Dade Christian School (Miami,FL) | |
| 21 | 578 | June-Reg | Curtis Romboli | p | 22 | 6-0 | 190 | L | L | A | | Boston College | |
| 22 | 606 | June-Reg | Pete Prodanov | 3B-OF | 21 | 6-1 | 200 | R | R | A | | Oklahoma State University | |
| 23 | 634** | June-Reg | Chuck Lopez | OF | 18 | 6-1 | 195 | L | L | AA | - | Gahr (Cerritos,CA) | |
| 24 | 662** | June-Reg | Christopher Toomey | OF-p | 17 | 6-2 | 210 | R | R | A | | Dana Hills (Dana Point,CA) | |
| 25 | 690 | June-Reg | Scott Jones | p | 22 | 6-0 | 200 | R | R | A | | Miami University | |
| 26 | 718 | June-Reg | Mo Rojas | OF | 18 | 5-11 | 180 | R | R | A+ | | | |
| 27 | 746 | June-Reg | Juan Pena | p | 18 | 6-5 | 215 | R | R | MLB | 1999-1999 | Miami-Dade College | |
| 28 | 774 | June-Reg | Kaleb Harp | OF | | | | | | - | | DeKalb (DeKalb,TX) | |
| 29 | 802 | June-Reg | Bob Rauch | p-SS | 22 | 6-1 | 195 | R | R | Rookie | | Lamar University | |
| 30 | 830 | June-Reg | Mark Varriano | OF | 22 | 6-1 | 195 | R | R | A+ | | University of North Dakota | |
| 31 | 858 | June-Reg | Cliff Brand | p | | | | | | Ind | | Central Gwinnett (Lawrenceville,GA) | |
| 32 | 886 | June-Reg | Cordele Mincey | p | | | | | | - | | Dodge County (Eastman,GA) | |
| 33 | 914** | June-Reg | Matt Burch | p | 18 | 6-2 | 190 | R | R | AA | | Edison (Horseheads,NY) | |
| 34 | 942** | June-Reg | Bart Vaughn | p | | | | | | - | | Mount Dora Bible (Orlando,FL) | |
| 35 | 970 | June-Reg | Nick Gruber | C | 18 | 6-0 | 185 | R | R | Rookie | | Haddon Township (Westmont,NJ) | |
| 36 | 998** | June-Reg | Derrick Lewis | p | 19 | 6-5 | 215 | R | R | AAA | | Central Alabama Community College | |
| 37 | 1026** | June-Reg | Angel Diaz | Of | 18 | 6-0 | 198 | R | R | AAA | | Hillsborough Community College | |
| 38 | 1054** | June-Reg | Timothy Boeth | SS | | | 0 | | | A- | | Leon (Tallahassee,FL) | |
| 39 | 1082** | June-Reg | Jason Wilson | p | | | | | | - | | South Broward (Hollywood,FL) | |
| 40 | 1110 | June-Reg | Jim Farrell | p | 21 | 6-1 | 180 | R | R | AAA | | Kent State University | |
| 41 | 1138 | June-Reg | Brian Messer | p | 18 | 6-4 | 208 | R | R | A | | Shawnee Mission Northwest (Shawnee,KS) | |
| 42 | 1166 | June-Reg | Juan Chaidez | C | 18 | 6-2 | 205 | B | R | Rookie | | Dade Christian School (Miami,FL) | |
| 43 | 1194** | June-Reg | Pat Burrell | 3B | 18 | 6-4 | 225 | R | R | MLB | 2000-2009 | | |
| 44 | 1222 | June-Reg | Bryan Wright | SS | 19 | 5-11 | 162 | R | R | A- | | Escambia (Pensacola,FL) | |
| 45 | 1248 | June-Reg | Kris Brown | of | | | | | | - | | Kalamazoo Central (Kalamazoo,MI) | |