| 1 | 17 | June-Reg | Roy Halladay | P | 18 | 6-6 | 225 | R | R | MLB | 1998-2009 | Arvada West (Arvada,CO) | $895,000 |
| 2 | 47 | June-Reg | Craig Wilson | C | 18 | 6-2 | 217 | R | R | MLB | 2001-2007 | Marina (Huntington Beach,CA) | $292,500 |
| 3 | 76 | June-Reg | Jeff Maloney | SS | 18 | 6-4 | 190 | B | R | A+ | | Ridge (Basking Ridge,NJ) | |
| 4 | 104 | June-Reg | Mike Whitlock | 1B | 18 | 6-3 | 200 | L | R | A+ | | San Lorenzo (San Lorenzo,CA) | |
| 5 | 132 | June-Reg | Jay Veniard | P | 20 | 6-4 | 215 | L | L | AA | | University of Central Florida | |
| 6 | 160 | June-Reg | Blaine Fortin | C | 17 | 6-2 | 205 | R | R | A- | | Lundar (Lundar,MB) | |
| 7 | 188 | June-Reg | Jeremi Rudolph | OF | 19 | 5-8 | 170 | R | R | Rookie | | Apopka (Apopka,FL) | |
| 8 | 216 | June-Reg | Dave Marciniak | SS | 18 | 6-2 | 200 | R | R | A+ | | Woodbridge (Woodbridge,NJ) | |
| 9 | 244 | June-Reg | Kyle Burchart | P | 18 | 6-5 | 190 | R | R | A- | | Bixby (Bixby,OK) | |
| 10 | 272 | June-Reg | Ryan Freel | 2B | 19 | 5-10 | 185 | R | R | MLB | 2001-2009 | Tallahassee Community College | |
| 11 | 300** | June-Reg | Allen Levrault | P | 17 | 6-3 | 230 | R | R | MLB | 2000-2003 | Westport (Westport,MA) | |
| 12 | 328 | June-Reg | John Curl | 1B | 22 | 6-3 | 205 | L | R | AAA | | Texas A&M University | |
| 13 | 356** | June-Reg | Ted Lilly | p | 19 | 6-0 | 185 | L | L | MLB | 1999-2009 | Fresno City College | |
| 14 | 384 | June-Reg | Jason Pomar | p | | | | R | R | A- | | Vero Beach (Vero Beach,FL) | |
| 15 | 412 | June-Reg | Robert Corraro | p | | | | | | - | | Xavier (Middletown,CT) | |
| 16 | 440 | June-Reg | Bill Brabec | p | 21 | 6-4 | 210 | R | R | Rookie | | Illinois State University | |
| 17 | 468 | June-Reg | Johnny Byrd | p | | | | | | - | | University Christian (Jacksonville,FL) | |
| 18 | 496** | June-Reg | Doug Dent | p | 18 | 6-8 | 210 | R | R | AA | | San Juan (Carmichael,CA) | |
| 19 | 524 | June-Reg | Jaron Seabury | p | 19 | 6-4 | 215 | R | R | A+ | | Bellevue Community College | |
| 20 | 552 | June-Reg | Braxton Whitehead | 1B-C | 19 | 6-2 | 215 | R | R | AA | | Meridian Community College | |
| 21 | 580 | June-Reg | Logan Miler | C | | | | | | - | | Texas Tech University | |
| 22 | 608 | June-Reg | Scott Fitterer | p | 21 | 6-2 | 200 | R | R | A+ | | Louisiana State University | |
| 23 | 636 | June-Reg | Brian Bejarano | 3B | 20 | 6-2 | 200 | R | R | Rookie | | Central Arizona College | |
| 24 | 664** | June-Reg | Mark Curtis | p | 17 | 6-4 | 190 | R | L | A- | | Bellerose (St. Albert,AB) | |
| 25 | 692 | June-Reg | John Mitchell | p | | | | | | - | | Cal State Fullerton | |
| 26 | 720 | June-Reg | John Kehoe | 2B | 22 | 6-0 | 185 | R | R | A | | Cumberland University | |
| 27 | 748 | June-Reg | Robert Medina | OF | 19 | 6-2 | 193 | R | R | A- | | | |
| 28 | 776 | June-Reg | Chris Hayes | 3B | 21 | 6-2 | 190 | R | R | AA | | Jacksonville University | |
| 29 | 804 | June-Reg | Brian Williams | C | | | | | | A+ | | Texas State University | |
| 30 | 832** | June-Reg | Brandon Duckworth | p | 19 | 6-2 | 185 | B | R | MLB | 2001-2008 | College of Southern Idaho | |
| 31 | 860 | June-Reg | John Douglas | SS | 21 | 6-3 | 186 | R | R | Rookie | | Catholic University of America | |
| 32 | 888 | June-Reg | Stanley Gay | p | | | | | | - | | | |
| 33 | 916** | June-Reg | Todd Moser | p | 18 | 6-5 | 180 | L | L | AA | | State College of Florida, Manatee-Sarasota | |
| 34 | 944 | June-Reg | Andrew McCormick | Of | 22 | 5-11 | 190 | R | R | A+ | | Grand Canyon University | |
| 35 | 972 | June-Reg | Jonathan Herring | p | 19 | 6-3 | 190 | L | L | Rookie | | Alabama Christian Academy (Montgomery,AL) | |
| 36 | 1000 | June-Reg | Randy Albaral | Of | 18 | 6-2 | 180 | R | R | A | | Jesuit (River Ridge,LA) | |
| 37 | 1028 | June-Reg | Thomas Taylor | SS | | | | | | - | | Tate (Cantonment,FL) | |
| 38 | 1056 | June-Reg | Tyrone Gracia | 3B | | 6-3 | 225 | R | R | - | | Dennis-Yarmouth Regional (South Yarmouth,MA) | |
| 39 | 1084 | June-Reg | Eduardo Marquez | Of | 18 | 6-2 | 180 | R | R | A- | - | Mater Dei (Santa Ana,CA) | |
| 40 | 1112** | June-Reg | Brian Leach | p | | | | | | Rookie | | Osceola (Largo,FL) | |
| 41 | 1140 | June-Reg | Jesse Bechard | SS | | | | | | - | | Washington (Masillon,OH) | |
| 42 | 1168 | June-Reg | Thomas Peck | of | 20 | 6-1 | 160 | L | R | A+ | | Rollins College | |
| 43 | 1196 | June-Reg | Justin Johnson | of | | | | | | - | | Diamond Bar (Diamond Bar,CA) | |
| 44 | 1224** | June-Reg | Brian Fitts | p | 18 | 6-2 | 175 | R | R | A | | Gallatin (Gallatin,TN) | |
| 45 | 1250 | June-Reg | Joe Pierson | SS | | | | | | - | | Huntington (Huntington,WV) | |
| 46 | 1274 | June-Reg | Ryan Cisar | SS | 18 | 6-1 | 175 | R | R | Rookie | | Magnolia (New Martinsville,WV) | |
| 47 | 1298 | June-Reg | Antonio Jackson | of | | | | | | - | | Parker (Birmingham,AL) | |
| 48 | 1320 | June-Reg | Paxton Stewart | 1B | 21 | 6-3 | 185 | L | R | A+ | | Florida International University | |
| 49 | 1342** | June-Reg | Derek Hines | of | 18 | 6-2 | 205 | R | R | Rookie | | Arvada West (Arvada,CO) | |
| 50 | 1364 | June-Reg | Jeremy Satterfield | p | 19 | 6-3 | 200 | R | R | A- | | College of Southern Idaho | |
| 51 | 1383** | June-Reg | Kyle Adams | p | | | | | | - | | Creighton Prep (Omaha,NE) | |
| 52 | 1403 | June-Reg | Albert Colon | of | | | | | | - | | Apopka (Apopka,FL) | |
| 53 | 1422** | June-Reg | Ryan Bundy | C | 17 | 6-1 | 210 | R | R | A+ | | Lake Stevens (Lake Stevens,WA) | |
| 54 | 1440** | June-Reg | Allen Greene | 1B | 18 | 6-1 | 190 | B | R | A+ | | O'Dea (Seattle,WA) | |
| 55 | 1458 | June-Reg | Travis Grant | p | | | | | | - | | Skyline (Salt Lake City,UT) | |
| 56 | 1474 | June-Reg | Sidney Harden | p | | | | | | - | | Middle Georgia College | |
| 57 | 1489 | June-Reg | Pat Schuttz | of | | | | | | - | | Community College of Rhode Island | |
| 58 | 1503 | June-Reg | Doug Franklin | 2B | | | | | | - | | Pensacola Junior College | |
| 59 | 1516 | June-Reg | Andy Tarpley | p | | | | | | Ind | | University of California | |