| 1 | 7 | June-Reg | Jonathan Johnson | P | 20 | 6-0 | 180 | R | R | MLB | 1998-2003 | Florida State University | $1,100,000 |
| 2 | 37 | June-Reg | Phillip Lowery | P | 18 | 6-1 | 205 | L | L | A | | Casa Grande (Petaluma,CA) | |
| 3 | 66 | June-Reg | Ryan Dempster | P | 18 | 6-1 | 201 | R | R | MLB | 1998-2009 | Elphinstone (Gibsons,BC) | $200,000 |
| 4 | 94 | June-Reg | Ryan Glynn | P | 20 | 6-3 | 195 | R | R | MLB | 1999-2005 | Virginia Military Institute | |
| 5 | 122 | June-Reg | Shawn Gallagher | 1B | 18 | 6-0 | 187 | R | R | AAA | | New Hanover (Wilmington,NC) | |
| 6 | 150 | June-Reg | Danny Kolb | P | 20 | 6-4 | 215 | R | R | MLB | 1999-2007 | Sauk Valley Community College | |
| 7 | 178 | June-Reg | Jorge Carrion | P-SS | 18 | 6-1 | 175 | R | R | A | | DeWitt Clinton (Bronx,NY) | |
| 8 | 206 | June-Reg | Craig Monroe | SS | 18 | 6-1 | 195 | R | R | MLB | 2001-2009 | Texarkana (Texarkana,TX) | |
| 9 | 234** | June-Reg | Juan Rivera | C | 16 | 6-2 | 170 | R | R | MLB | 2001-2009 | | |
| 10 | 262 | June-Reg | Julio Mercado | OF | 18 | 6-0 | 180 | R | R | Rookie | | Brook Pointe (Stafford,VA) | |
| 11 | 290 | June-Reg | Brian Martineau | P | 20 | 6-2 | 205 | R | R | A | | Santiago Canyon College | |
| 12 | 318 | June-Reg | Bryan Link | p | 24 | 6-1 | 185 | L | L | A+ | | Winthrop University | |
| 13 | 346 | June-Reg | Cliff Brumbaugh | 3B | 21 | 6-2 | 205 | R | R | MLB | 2001-2001 | University of Delaware | |
| 14 | 374 | June-Reg | Brandon Knight | p | 19 | 6-0 | 170 | L | R | MLB | 2001-2008 | Ventura College | |
| 15 | 402 | June-Reg | Ryan Gorecki | 2B | 21 | 5-9 | 160 | L | R | A+ | | Seton Hall University | |
| 16 | 430 | June-Reg | Nate Vopata | 3B-2b | 22 | 5-10 | 170 | L | R | A | | Lewis-Clark State College | |
| 17 | 458 | June-Reg | Brian Llibre | C | 17 | 6-4 | 201 | R | R | Rookie | | West Covina (West Covina,CA) | |
| 18 | 486 | June-Reg | Damian Rose | OF | 18 | 5-10 | 173 | R | R | Rookie | | Overfelt (San Jose,CA) | |
| 19 | 514 | June-Reg | Charles Bauer | p | 21 | 6-0 | 185 | R | R | A+ | | College of Saint Rose | |
| 20 | 542 | June-Reg | Joe Goodwin | C | 21 | 5-10 | 180 | R | R | AA | | George Mason University | |
| 21 | 570 | June-Reg | Ted Silva | p | 20 | 6-0 | 170 | R | R | AA | | Cal State Fullerton | |
| 22 | 598 | June-Reg | Bobby Styles | p | 18 | 6-8 | 270 | R | R | Rookie | | East Henderson (Hendersonville,NC) | |
| 23 | 626 | June-Reg | Bobby Moore | p | 22 | 6-5 | 217 | R | R | AA | | University of Hawaii | |
| 24 | 654 | June-Reg | Manny Torres | p | 18 | 6-1 | 195 | R | R | - | | St. Joseph (Trumbull,CT) | |
| 25 | 682 | June-Reg | Mike McHugh | p | 22 | 5-11 | 180 | L | L | A+ | | Penn State University | |
| 26 | 710 | June-Reg | Chris Briones | C | 22 | 5-11 | 210 | R | R | AA | | University of Nevada | |
| 27 | 738 | June-Reg | David Brazeal | OF | 18 | 6-1 | 190 | R | R | A | | Mustang (Mustang,OK) | |
| 28 | 766** | June-Reg | Gary Johnson | OF | 18 | 6-4 | 210 | R | R | AA | 2003-2003 | East Los Angeles College | |
| 29 | 794 | June-Reg | Mike Venafro | p | 21 | 5-10 | 180 | L | L | MLB | 1999-2006 | James Madison University | |
| 30 | 822 | June-Reg | Scott Mudd | p | 22 | 6-0 | 195 | R | R | A+ | | Indiana University | |
| 31 | 850 | June-Reg | Kelly Stratton | OF | | | | | | A- | | University of Utah | |
| 32 | 878 | June-Reg | Scooter Bryant | p | 18 | 6-2 | 170 | L | L | Rookie | | Sulphur (Sulphur,LA) | |
| 33 | 906 | June-Reg | Joe Garibaldi | p | | | | | | - | | Terra Nova (Pacifica,CA) | |
| 34 | 934 | June-Reg | John McAulay | Of | | | | | | A+ | | William Carey University | |
| 35 | 962 | June-Reg | Bobby Kahlon | p | 22 | 6-0 | 175 | R | R | A | | University of California | |
| 36 | 990 | June-Reg | Joseph Williams | 3B | | | | | | - | | Chaffey (Ontario,CA) | |
| 37 | 1018 | June-Reg | Emar Fleming | p | 18 | 6-3 | 210 | R | R | A+ | | Allegany College of Maryland | |
| 38 | 1046** | June-Reg | Russel Bratton | p | | | | | | - | | Central (Columbia,TN) | |
| 39 | 1074** | June-Reg | D.J. Carrasco | p | 18 | 6-1 | 215 | R | R | MLB | 2003-2009 | Hayward (Hayward,CA) | |
| 40 | 1102 | June-Reg | Billy Reed | SS | | | | | | A- | | Auburn University | |
| 41 | 1130 | June-Reg | Mandell Echols | of | | 6-2 | 190 | R | R | A- | | William Carey University | |
| 42 | 1158 | June-Reg | Brent Sagedahl | p | | | | | | A- | | Carthage College | |
| 43 | 1186 | June-Reg | Amury Leon | SS | | | | | | - | | Tucson (Tucson,AZ) | |
| 44 | 1214 | June-Reg | Tom Smith | p | 18 | 6-3 | 205 | R | R | Rookie | | Petaluma (Petaluma,CA) | |
| 45 | 1241 | June-Reg | Mark Draeger | p | 22 | 6-3 | 180 | R | R | A | | Slippery Rock University of Pennsylvania | |
| 46 | 1266 | June-Reg | Tim Codd | p | 21 | 6-3 | 195 | R | R | A | | Edinboro University | |
| 47 | 1290 | June-Reg | Ryan Haley | p | 19 | 6-1 | 185 | L | R | A | | Loxahachee (Loxahachee,FL) | |