| 1 | 28 | June-Reg | Michael Barrett | SS | 18 | 6-2 | 200 | R | R | MLB | 1998-2009 | Pace Academy (Atlanta,GA) | $500,000 |
| 2 | 58 | June-Reg | Henry Mateo | SS | 18 | 5-11 | 170 | B | R | MLB | 2001-2006 | | $200,000 |
| 3 | 87 | June-Reg | Kenny James | OF | 18 | 6-0 | 198 | B | R | AAA | | Sebring (Sebring,FL) | |
| 4 | 115 | June-Reg | J.D. Smart | P | 21 | 6-2 | 190 | R | R | MLB | 1999-2001 | University of Texas | |
| 5 | 143 | June-Reg | Brian Schneider | C | 18 | 6-1 | 200 | L | R | MLB | 2000-2009 | Northampton (Northampton,PA) | |
| 6 | 171 | June-Reg | Ronney Daniels | OF-P | 18 | 6-3 | 210 | R | L | A- | | Lake Wales (Lake Wales,FL) | |
| 7 | 199 | June-Reg | Peter Fortune | P | 20 | 6-2 | 190 | L | L | A | | Rockland Community College | |
| 8 | 227 | June-Reg | Trey Martin | P | 18 | 6-2 | 175 | R | R | A- | | Arcadia (Phoenix,AZ) | |
| 9 | 255 | June-Reg | Bienvenido Sanchez | P | 19 | 6-1 | 185 | R | R | Rookie | | | |
| 10 | 283** | June-Reg | Jeff Austin | P | 18 | 6-0 | 185 | R | R | MLB | 2001-2003 | Kingwood (Kingwood,TX) | |
| 11 | 311 | June-Reg | Jimmy Turman | P | 19 | 6-0 | 210 | R | R | A+ | | Shelton State Community College | |
| 12 | 339 | June-Reg | Rob Marquez | p | 22 | 6-0 | 200 | R | R | AAA | | McNeese State University | |
| 13 | 367 | June-Reg | David Herr | p | | | | | | A- | | Villanova University | |
| 14 | 395 | June-Reg | Tim Dixon | p | 23 | 6-2 | 215 | L | L | AAA | | Cal State Fullerton | |
| 15 | 423 | June-Reg | D.C. Olsen | 1B | 23 | 6-0 | 220 | R | R | A | | Cal State Fullerton | |
| 16 | 451 | June-Reg | Pete Laforest | SS-3B | 17 | 6-2 | 209 | L | R | MLB | 2003-2007 | | |
| 17 | 479 | June-Reg | Wes Denning | OF | | 5-11 | 190 | L | R | A | | University of Minnesota | |
| 18 | 507 | June-Reg | Tom Brady | C | 17 | 6-4 | 225 | | | - | | Junipero Serra (San Mateo,CA) | |
| 19 | 535 | June-Reg | Jacob Steinkemper | C | | | | | | A- | | Arizona State University | |
| 20 | 563 | June-Reg | Mike Bell | p | 22 | 6-2 | 195 | L | L | AA | | Florida State University | |
| 21 | 591** | June-Reg | Stan Baston | OF-3B | 18 | 6-2 | 180 | R | R | A | | North Florida Christian (Tallahassee,FL) | |
| 22 | 619 | June-Reg | Scott Mitchell | p | 22 | 6-0 | 185 | R | R | AAA | | University of the Pacific | |
| 23 | 647 | June-Reg | Mo Blakeney | OF | 22 | 5-10 | 180 | R | R | A+ | | Elon University | |
| 24 | 675 | June-Reg | Mike Wolger | OF-p | 22 | 6-1 | 215 | L | L | A+ | | University of California | |
| 25 | 703 | June-Reg | Jaime Garcia | C | | | | | | A | | University of New Mexico | |
| 26 | 731 | June-Reg | Ryan Van Oeveren | SS | | | | | | - | | University of Michigan | |
| 27 | 759 | June-Reg | Noah Hall | OF | 18 | 5-11 | 200 | R | R | AAA | | Aptos (Aptos,CA) | |
| 28 | 787 | June-Reg | Jarrett Shearin | OF | | 6-0 | 190 | R | R | A- | | Wake Forest-Rolesville (Wake Forest,NC) | |
| 29 | 815 | June-Reg | Jeremiah Colson | OF | 19 | 5-11 | 170 | L | L | Rookie | | St. Paul's (St. Paul's,NC) | |
| 30 | 843 | June-Reg | James Lacey | p | 19 | 6-7 | 210 | R | R | Rookie | | Coconut Creek (Coconut Creek,FL) | |
| 31 | 871 | June-Reg | Toby McDermott | p | 19 | 6-2 | 200 | L | L | Ind | | Tacoma Community College | |
| 32 | 899 | June-Reg | Joe Kerrigan | SS | 17 | 5-10 | 180 | L | R | A+ | | Radnor (Radnor,PA) | |
| 33 | 927 | June-Reg | Shawn Peterson | C-Of | | | | | | - | | Orem (Orem,UT) | |
| 34 | 955 | June-Reg | Scott Porter | p | 18 | 6-1 | 195 | R | R | A+ | | Middleburg (Middleburg,FL) | |
| 35 | 983** | June-Reg | Mitch Wylie | p | 18 | 6-3 | 190 | R | R | AAA | | North Scott (Eldridge,IA) | |
| 36 | 1011 | June-Reg | Aaron Underwood | p | 18 | 6-3 | 200 | R | R | - | | Lehigh (Lehigh Acres,FL) | |
| 37 | 1039** | June-Reg | Matthew Dehner | 3B | 18 | 6-4 | 205 | R | R | A | | Eldorado (Las Vegas,NV) | |
| 38 | 1067 | June-Reg | Brandon Gadke | Of | | | | | | - | | Orange (Orange,OH) | |
| 39 | 1095 | June-Reg | Bruno Vaillancourt | p | | | | | | - | | | |
| 40 | 1123** | June-Reg | Shane Wright | p | 18 | 6-3 | 224 | R | R | A | | Hayden (Topeka,KS) | |
| 41 | 1151 | June-Reg | Rob Everett | p | 13 | 6-0 | 190 | R | R | Rookie | | Lake City Community College | |
| 42 | 1179 | June-Reg | Torrance Davis | of | 19 | 6-1 | 180 | R | R | Rookie | | Liberty Eylau (Texarkana,TX) | |
| 43 | 1207** | June-Reg | Jesse Crespo | C | 17 | 6-3 | 200 | R | R | Rookie | | | |
| 44 | 1235 | June-Reg | Philip Derryman | p | 18 | | | | | - | | Moorpark College | |
| 45 | 1260 | June-Reg | Adam Huxhold | p | 18 | 6-1 | 175 | L | L | Rookie | | Lindbergh (Renton,WA) | |
| 46 | 1284** | June-Reg | Danny Prata | p | 16 | 6-0 | 190 | L | L | A+ | | | |