| 1 | 22 | June-Reg | Tony McKnight | P | 18 | 6-5 | 205 | R | R | MLB | 2000-2001 | Arkansas (Texarkana,AR) | $500,000 |
| 2 | 52 | June-Reg | Eric Ireland | P | 18 | 6-1 | 170 | R | R | AAA | | Millikan (Long Beach,CA) | $240,600 |
| 3 | 81 | June-Reg | Chad Alexander | OF | 21 | 6-1 | 195 | R | R | AAA | - | Texas A&M University | |
| 4 | 109 | June-Reg | Brian Sikorski | P | 21 | 6-1 | 190 | R | R | MLB | 2000-2006 | Western Michigan University | |
| 5 | 137** | June-Reg | Mike Rose | OF | 18 | 6-1 | 185 | B | R | MLB | 2004-2006 | Jesuit (Carmichael,CA) | |
| 6 | 165 | June-Reg | Scott Chapman | OF | 17 | 6-3 | 205 | R | R | AA | | Alexander (Albany,OH) | |
| 7 | 193 | June-Reg | Jason McCarter | P | 18 | 6-3 | 210 | R | R | A | | Monterey Peninsula College | |
| 8 | 221 | June-Reg | Eric Smith | P | 21 | 5-11 | 180 | R | R | AA | | Butler Community College | |
| 9 | 249 | June-Reg | Jason Adams | SS | 21 | 5-11 | 195 | R | R | A+ | | Wichita State University | |
| 10 | 277 | June-Reg | Jeremy DeShazer | OF | 18 | 5-10 | 175 | B | R | A+ | | Lake Washington (Kirkland,WA) | |
| 11 | 305 | June-Reg | Ric Johnson | OF | 21 | 6-2 | 180 | R | R | AA | | Indiana State University | |
| 12 | 333 | June-Reg | Eric Stachler | p | 22 | 6-3 | 215 | R | R | A+ | | Bowling Green State University | |
| 13 | 361 | June-Reg | Marlon Mejia | SS | 20 | 6-1 | 175 | R | R | A | | Westchester Community College | |
| 14 | 389 | June-Reg | Barry Wesson | OF | 18 | 6-2 | 212 | R | R | MLB | 2002-2003 | | |
| 15 | 417 | June-Reg | Mike Corominas | p | 20 | 6-2 | 190 | L | L | A- | | Arizona State University | |
| 16 | 445** | June-Reg | Aaron Vincent | p | | | | | | - | | Porterville College | |
| 17 | 473 | June-Reg | Charles Wheeler | p | | | | | | - | | Connors State College | |
| 18 | 501 | June-Reg | Derek Wallace | OF | 23 | 6-3 | 215 | R | R | MLB | 1996-1999 | Neville (Monroe,LA) | |
| 19 | 529 | June-Reg | Aaron Miles | 2B | 18 | 5-8 | 170 | B | R | MLB | 2003-2009 | | |
| 20 | 557 | June-Reg | Eric Cole | 3B | 19 | 6-0 | 185 | R | R | AAA | | Antelope Valley College | |
| 21 | 585** | June-Reg | David Huggins | p | 19 | 6-5 | 190 | R | R | AA | | Galveston College | |
| 22 | 613** | June-Reg | Shawn Sonnier | p | 18 | 6-5 | 210 | R | R | Intl | | Chipola College | |
| 23 | 641 | June-Reg | Nelson Ubaldo | OF | 21 | 6-2 | 200 | R | R | Rookie | | University of Massachusetts | |
| 24 | 669 | June-Reg | Jeriome Robertson | p | 18 | 6-1 | 190 | L | L | MLB | 2002-2004 | Exeter Union (Exeter,CA) | |
| 25 | 697 | June-Reg | Andy Bovender | 3B | 22 | 6-3 | 190 | R | R | A+ | | University of North Carolina-Charlotte | |
| 26 | 725** | June-Reg | James Alarcon | p | 18 | 6-3 | 188 | R | R | Rookie | | Jupiter Community (Jupiter,FL) | |
| 27 | 753 | June-Reg | Aaron McNeal | 1B | 17 | 6-3 | 230 | R | R | AAA | | Castro Valley (Castro Valley,CA) | |
| 28 | 781 | June-Reg | Adrian Taylor | SS | | | | | | - | | Oakland Tech (Oakland,CA) | |
| 29 | 809 | June-Reg | Troy Stoppa | p | | | | | | - | | Havre (Havre,MT) | |
| 30 | 837** | June-Reg | Bobby Porter | p | 18 | 6-4 | 185 | B | L | Rookie | | McComb (McComb,MS) | |
| 31 | 865 | June-Reg | Caleb Brown | p | | | | | | - | | Howard College | |
| 32 | 893 | June-Reg | Tim Hamulack | OF-p | 18 | 6-4 | 215 | L | L | MLB | 2005-2006 | Edgewood (Edgewood,MD) | |
| 33 | 921 | June-Reg | Gregg Smyth | p | 22 | 6-2 | 185 | R | L | A- | | Rollins College | |
| 34 | 949** | June-Reg | Bryan King | p | | | | | | - | | Brawley Union (Brawley,CA) | |
| 35 | 977** | June-Reg | Eric Eckenstahler | p | 18 | 6-7 | 220 | L | L | MLB | 2002-2003 | Antioch (Antioch,IL) | |
| 36 | 1005** | June-Reg | Brian Moon | C | 17 | 6-0 | 190 | B | R | AAA | | Newton (Covington,GA) | |
| 37 | 1033 | June-Reg | Javier Contreras | p | | | | | | - | | | |
| 38 | 1061** | June-Reg | Scott Sandusky | C | 19 | 6-0 | 195 | R | R | AAA | | Seward County Community College | |
| 39 | 1089 | June-Reg | Corbett Leonard | C | | | | | | - | | Spring Grove (Spring Grove,PA) | |
| 40 | 1117 | June-Reg | Ryan Coe | C | 22 | 5-10 | 200 | R | R | A+ | | Kennesaw State University | |
| 41 | 1145 | June-Reg | Marty Godwin | of | | | | | | - | | Osceola (Kissimmee,FL) | |
| 42 | 1173 | June-Reg | Jason Welch | of | | | | | | - | | Edison State College | |
| 43 | 1201 | June-Reg | Brett Brown | p | 21 | 6-3 | 210 | L | L | A+ | | Delaware Technical & Community College | |
| 44 | 1229 | June-Reg | Stephen Schwartz | p | | | | | | - | | Aurora University | |
| 45 | 1255 | June-Reg | Brock Ashby | of | | | | | | - | | St. Francis Xavier (Edmonton,AB) | |
| 46 | 1279** | June-Reg | Troy Norrell | C | 18 | 6-0 | 190 | R | R | A | | Brazoswood (Clute,TX) | |
| 47 | 1303** | June-Reg | Mark Burnett | SS | 18 | 5-11 | 175 | R | L | AA | | Bryant (Bryant,AR) | |
| 48 | 1325 | June-Reg | Luis Ramos | p | | | | | | - | | | |
| 49 | 1347 | June-Reg | Walter Harrington | p | | | | | | - | | Palomar College | |
| 50 | 1368 | June-Reg | Ryan Channel | p | | | | | | - | | Satellite (Satellite Beach,FL) | |
| 51 | 1387 | June-Reg | Jorge Mesa | of | | | | | | - | | Braddock (Miami,FL) | |
| 52 | 1407 | June-Reg | Ryan Block | p | | | | | | - | | Walla Walla (Walla Walla,WA) | |
| 53 | 1426** | June-Reg | Corey Hart | 2B | 19 | 6-0 | 190 | B | R | AAA | | Connors State College | |
| 54 | 1444 | June-Reg | Mark Chambers | of | | | | | | - | | Navarro College | |
| 55 | 1462 | June-Reg | Stephen Dye | p | | | | | | - | | Middle Georgia College | |
| 56 | 1478** | June-Reg | Brian Berryman | p | 17 | 6-4 | 200 | R | R | A | | Union (Redford, MI) | |
| 57 | 1493** | June-Reg | Chris Hargett | 1B | | | | | | - | | Jeffersonville (Jeffersonville,IN) | |
| 58 | 1507 | June-Reg | Juan Rivera | SS | 16 | 6-2 | 170 | R | R | MLB | 2001-2009 | Palm Beach Community College | |
| 59 | 1520 | June-Reg | Chris Meyer | p | | | | | | - | | Dakota Collegiate Institute (Winnipeg,MB) | |
| 60 | 1531 | June-Reg | Frank Bludau | p | 18 | 6-0 | 195 | R | R | AA | | Hallettsville (Hallettsville,TX) | |
| 61 | 1541 | June-Reg | Mark Tomse | p | | | | | | Ind | | Central Catholic (Aurora,IL) | |
| 62 | 1550 | June-Reg | Josh Pascarella | p | 18 | 6-0 | 175 | R | R | A+ | | Rancho Bernardo (San Diego,CA) | |
| 63 | 1559 | June-Reg | Adam Bell | C | | | | | | - | | Helena (Helena,MT) | |
| 64 | 1567 | June-Reg | James Crossiey | 3B | | | | | | - | | Chabot College | |
| 65 | 1575 | June-Reg | Gabriel Garcia | C-p | 18 | 6-2 | 215 | R | R | A+ | | Logan (Union City,CA) | |
| 66 | 1582 | June-Reg | James Hawkins | p | | | | | | - | | Santa Margarita Catholic (Rancho Santa Margarita,CA) | |
| 67 | 1589 | June-Reg | Chris Oldham | C | | | | | | - | | Sullivan (Sullivan,MO) | |
| 68 | 1596 | June-Reg | Brian Jordan | p | | | | | | - | | Gordon College | |
| 69 | 1602** | June-Reg | Blake Ricken | p | 20 | 6-0 | 174 | L | L | Ind | | Fresno City College | |
| 70 | 1608 | June-Reg | Josh Maloney | p | | | | | | - | | Central (Butte,MT) | |
| 71 | 1613 | June-Reg | Chris Hill | p | 20 | 6-0 | 165 | R | R | Ind | | Long Beach City College | |
| 72 | 1618** | June-Reg | Mike Meyers | p | 17 | 6-2 | 210 | R | R | AAA | | Annandale (Annandale,ON) | |
| 73 | 1622 | June-Reg | Chris Castleberry | C | | | | | | - | | Americus (Americus,GA) | |
| 74 | 1626 | June-Reg | Pete Fukuhara | of | 19 | 5-10 | 175 | R | R | A+ | | Canada College | |
| 75 | 1630 | June-Reg | Brian Fritz | 1B | | | | | | - | | Santa Ynez (Santa Ynez,CA) | |
| 76 | 1634 | June-Reg | Roger Foltynowicz | 3B | | | | | | Rookie | | Lakeside (Atlanta,GA) | |
| 77 | 1638 | June-Reg | Wayne Chinapen | p-of | | | | | | Ind | | York Mills Collegiate Institute (Willowdale,ON) | |
| 78 | 1641 | June-Reg | Scott Pasonage | p | | | | | | - | | Fullerton College | |
| 79 | 1644 | June-Reg | Jason Von Haefen | p | 19 | 6-3 | 215 | R | R | Ind | | Blinn College | |
| 80 | 1647 | June-Reg | Chris Sheldon | of | | | | | | - | | Glendale (Glendale,CA) | |
| 81 | 1650 | June-Reg | Darren Brown | p | | | | | | - | | Brophy College Prep (Phoenix,AZ) | |
| 82 | 1653 | June-Reg | Shawn Jacob | C | | | | | | - | | | |
| 83 | 1655 | June-Reg | Bill Eaton | SS-p | | | | | | - | | Indian River State College | |
| 84 | 1658 | June-Reg | Brian Issett | of | | | | | | - | | Kimball (Royal Oak,MI) | |
| 85 | 1661 | June-Reg | Charley Carter | 1B | 19 | 6-2 | 205 | R | R | AA | | McLennan Community College | |
| 86 | 1663 | June-Reg | George Pickard | 1B | | | | | | - | | Hill College | |