| 2 | 54 | June-Reg | Tommy Davis | 1B | 21 | 6-1 | 210 | R | R | MLB | 1999-1999 | University of Southern Mississippi | $225,000 |
| 3 | 83 | June-Reg | Roger Worley | P | | | | | | Rookie | | Quartz Hill (Quartz Hill,CA) | |
| 4 | 111 | June-Reg | Jason Rogers | P | 21 | 6-6 | 220 | L | L | AAA | | University of Nevada | |
| 5 | 139 | June-Reg | Todd LaRocca | P-SS | 21 | 6-1 | 185 | R | R | A+ | | Stanford University | |
| 6 | 167 | June-Reg | Brandon Huntsman | P | 18 | 6-4 | 195 | R | R | A+ | | Pleasant Grove (Pleasant Grove,UT) | |
| 7 | 195 | June-Reg | Noel Ramos | 1B | 17 | 6-1 | 230 | R | R | Rookie | | | |
| 8 | 223 | June-Reg | Richard Welsh | SS | | | | | | - | | Germantown Academy (Fort Washington,PA) | |
| 9 | 251 | June-Reg | Chris Fussell | P | 18 | 6-2 | 200 | R | R | MLB | 1998-2000 | Clay (Oregon,OH) | |
| 10 | 279** | June-Reg | Jason Hairston | C | 18 | 6-2 | 212 | R | R | A | | Jefferson (Portland,OR) | $0 |
| 11 | 307 | June-Reg | Brian Kerr | OF | 18 | 6-0 | 180 | R | R | Rookie | | Farmington (Farmington,NM) | |
| 12 | 335 | June-Reg | Todd Dyess | p | 21 | 6-3 | 192 | R | R | A+ | | Tulane University | |
| 13 | 363 | June-Reg | Sean Hugo | 1B-OF | 21 | 6-1 | 195 | L | L | AA | | Oklahoma State University | |
| 14 | 391 | June-Reg | Kedric Porter | OF | 19 | 5-10 | 170 | R | R | Ind | | Hillsborough (Tampa,FL) | |
| 15 | 419 | June-Reg | Chris Kirgan | 1B | 21 | 6-4 | 235 | R | R | AAA | | University of Northern Colorado | |
| 16 | 447 | June-Reg | Rachaad Stewart | p | 19 | 6-4 | 212 | L | L | AA | | Triton College | |
| 17 | 475 | June-Reg | Mike Nadeau | 2B | 20 | 5-9 | 180 | R | R | A+ | | George Fox University | |
| 18 | 503** | June-Reg | John Sneed | p | 18 | 6-7 | 250 | L | R | AAA | | Westfield (Houston,TX) | |
| 19 | 531 | June-Reg | Matt Leviton | p | | | | | | - | | DeMatha (Hyattsville,MD) | |
| 20 | 559 | June-Reg | Rolo Avila | OF | 20 | 5-8 | 170 | R | R | AAA | | Long Beach State University | |
| 21 | 587 | June-Reg | Mike Wolff | 1B | 21 | 6-3 | 205 | L | L | AA | | Miami University | |
| 22 | 615 | June-Reg | Ryan Young | p | 19 | 6-0 | 175 | R | R | A- | | University of Mississippi | |
| 23 | 643 | June-Reg | Tom D'Aguila | OF | | | | | | - | | North Carolina Wesleyan College | |
| 24 | 671 | June-Reg | Shawn Bates | p | 19 | 6-3 | 202 | L | L | A+ | | New Mexico Junior College | |
| 25 | 699** | June-Reg | Michael Young | OF | 17 | 6-1 | 175 | R | R | MLB | 2000-2009 | | |
| 26 | 727 | June-Reg | Brad Crills | p | 22 | 6-0 | 195 | R | R | A+ | | Mansfield University of Pennsylvania | |
| 27 | 755 | June-Reg | Matt Marenghi | p | 21 | 6-2 | 185 | R | R | A+ | | Stanford University | |
| 28 | 783 | June-Reg | Frank Harmer | C | 19 | 6-3 | 210 | B | R | A+ | | Brevard Community College | |
| 29 | 811 | June-Reg | Craig Daedelow | SS | 18 | 5-11 | 183 | R | R | AA | | Huntington Beach (Huntington Beach,CA) | |
| 30 | 839 | June-Reg | Pedro Ortiz | OF | 17 | 6-0 | 175 | R | R | Rookie | | | |
| 31 | 867 | June-Reg | Chris Sauritch | 2B | 22 | 5-10 | 175 | B | R | A+ | | Southern Illinois University | |
| 32 | 895 | June-Reg | Tim Daigle | p | 22 | 5-11 | 180 | L | L | A+ | | Nicholls State University | |
| 33 | 923 | June-Reg | Rick Short | 3B | 21 | 6-0 | 200 | R | R | MLB | 2005-2005 | Western Illinois University | |
| 34 | 951 | June-Reg | Robert Conway | p | | | | | | A- | | Tulane University | |
| 35 | 979 | June-Reg | Bradley Wagers | p | | | | | | - | | Parkland College | |
| 36 | 1007 | June-Reg | Billy Oliver | p | | | | | | - | | Greenwood (Bowling Green,KY) | |
| 37 | 1035 | June-Reg | Chris Kennedy | p | | | | | | - | | Quitman (Quitman,MS) | |
| 38 | 1063 | June-Reg | Ryan Hendricks | 1B | 21 | 6-3 | 205 | L | R | A+ | | St. Andrews Presbyterian College | |
| 39 | 1091 | June-Reg | Todd Brown | Of | 22 | 5-11 | 165 | B | R | A+ | | University of Florida | |
| 40 | 1118 | June-Reg | Derek Brown | 2B | 17 | 6-1 | 180 | R | R | AAA | | South Hagerstown (Hagerstown,MD) | |
| 41 | 1144 | June-Reg | Steven Cook | p | | | | | | - | | Blair (Blair,NE) | |
| 42 | 1170 | June-Reg | Allen Sebold | C | | | | | | - | | Northern Garrett (Accident,MD) | |
| 43 | 1196 | June-Reg | Chris Blue | SS | | | | | | - | | Easton (Easton,MD) | |
| 44 | 1222** | June-Reg | Brian August | SS | 18 | 6-2 | 180 | R | R | A+ | | St. Mark's (Wilmington,DE) | |