| 1 | 16 | June-Reg | Alan Benes | P | 21 | 6-5 | 235 | R | R | MLB | 1995-2003 | Creighton University | $500,000 |
| 2 | 44 | June-Reg | Nate Dishington | 1B | 18 | 6-3 | 210 | L | R | AAA | | Hoover (San Diego,CA) | $200,000 |
| 2 | 58 | June-Reg | Jay Witasick | P | 20 | 6-4 | 235 | R | R | MLB | 1996-2007 | University of Maryland-Baltimore County | $133,200 |
| 3 | 88 | June-Reg | Eli Marrero | C | 19 | 6-1 | 180 | R | R | MLB | 1997-2006 | Coral Gables (Coral Gables,FL) | |
| 4 | 116** | June-Reg | Darrell Nicholas | OF | 21 | 5-11 | 180 | R | R | AAA | | University of New Orleans | |
| 5 | 144 | June-Reg | Marc Ottmers | P | | | | | | A | | University of Texas-Pan American | |
| 6 | 172 | June-Reg | David Carroll | P | 20 | 6-3 | 205 | R | L | AAA | | State College of Florida, Manatee-Sarasota | |
| 7 | 200 | June-Reg | Jeff Berblinger | 2B | 22 | 6-0 | 190 | R | R | MLB | 1997-1997 | University of Kansas | |
| 8 | 228 | June-Reg | Rantie Harper | OF | | | | | | A | | Point Loma (San Diego,CA) | |
| 9 | 256 | June-Reg | Mike Windham | P | 21 | 6-1 | 185 | R | R | AA | | University of North Florida | |
| 10 | 284 | June-Reg | Mike Martin | P | | | | | | Rookie | | Walters State Community College | |
| 11 | 312 | June-Reg | Scott Marguardt | P | | | | | | - | | Galveston College | |
| 12 | 340 | June-Reg | Chris Christopher | OF | | | | | | AA | | Auburn University | |
| 13 | 368 | June-Reg | Anton French | OF | 17 | 5-11 | 170 | B | R | AAA | | Lafayette (Lafayette,LA) | |
| 14 | 396 | June-Reg | Dave Madsen | 3B | | | | | | A+ | | Brigham Young University | |
| 15 | 424 | June-Reg | Dee Dalton | SS | | | | | | AA | | Virginia Tech | |
| 16 | 452 | June-Reg | Tom McMillan | OF | | | | | | A | | | |
| 17 | 480 | June-Reg | Travis Welch | p | 19 | 6-0 | 202 | R | R | AA | | Sacramento City College | |
| 18 | 508 | June-Reg | Jeremy Current | OF | | | | | | Rookie | | Mount Zion (Mount Zion,IL) | |
| 19 | 536 | June-Reg | Steven Santucci | OF | | | | | | AA | | Assumption College | |
| 20 | 564 | June-Reg | Ossie Garcia | OF | 19 | 6-1 | 180 | R | R | AA | | Miami-Dade College | |
| 21 | 592 | June-Reg | Armando Almanza | p | 20 | 6-3 | 205 | L | L | MLB | 1999-2005 | New Mexico Junior College | |
| 22 | 620 | June-Reg | Kris Detmers | p | 19 | 6-5 | 215 | B | L | AAA | | Lincoln Land Community College | |
| 23 | 648 | June-Reg | Keith Conway | p | 20 | 6-2 | 200 | R | L | A+ | | Gloucester County College | |
| 24 | 676 | June-Reg | Greg Almond | C | 22 | 6-0 | 195 | R | R | AA | | North Carolina State University | |
| 25 | 704 | June-Reg | Ronald Johnson | p | | | | | | A | | Rice University | |
| 26 | 732 | June-Reg | Greg Deares | OF | | | | | | A+ | | George Mason University | |
| 27 | 760** | June-Reg | Jeremy Ross | p | 19 | 6-4 | 185 | R | R | A- | | Dixie State College of Utah | |
| 28 | 788 | June-Reg | Richard Lopez | OF | | | | | | Rookie | | Mount San Antonio College | |
| 29 | 816 | June-Reg | Joe Jumonville | 3B | | | | | | A+ | | University of Louisiana at Lafayette | |
| 30 | 844 | June-Reg | Cory Corrigan | p | | | | | | A+ | | Ohio University | |
| 31 | 872 | June-Reg | Daniel Pontes | p | 22 | 6-3 | 200 | R | R | AAA | | Long Island University-Brooklyn Campus | |
| 32 | 900 | June-Reg | Michael Matvey | SS | | | | | | AA | | Berry College | |
| 33 | 928 | June-Reg | Freddie Parker | p | | | | | | Rookie | | Northeast (Clarksville,TN) | |
| 34 | 956 | June-Reg | Ron Scott | p | | | | | | A | | University of Florida | |
| 35 | 984 | June-Reg | Matt Arrandale | p | 22 | 6-0 | 165 | R | R | AAA | | University of Illinois | |
| 36 | 1012 | June-Reg | Mark Dean | SS-Of | | | | | | A | | Georgia Southern University | |
| 37 | 1040 | June-Reg | Anthony Magnelli | p | | | | | | A+ | | Dominican College | |
| 38 | 1068 | June-Reg | Kevin Herde | C | | | | | | Rookie | | University of San Diego | |
| 39 | 1096 | June-Reg | Robert Battles | p | | | | | | A | | Southern Polytechnic State | |
| 40 | 1124 | June-Reg | Sheldon Cain | p | | | | | | A+ | | Berry College | |
| 41 | 1152 | June-Reg | Eric Alexander | p | | | | | | A | | Florida International University | |
| 42 | 1180 | June-Reg | Joseph Henson | 1B-of | | | | | | A- | | Lipscomb University | |
| 43 | 1207 | June-Reg | Kurt Grashaw | p | | | | | | - | | University of Hartford | |
| 44 | 1234 | June-Reg | Troy Barrick | p | | | | | | A | | North Carolina Wesleyan College | |
| 45 | 1260 | June-Reg | Mark Cruise | p | | | | | | A | | Fresno State University | |
| 46 | 1284 | June-Reg | Curtis Williams | of | | | | | | A | | Connors State College | |
| 47 | 1308 | June-Reg | Tighe Curran | p | | | | | | A | | Ventura College | |
| 48 | 1331** | June-Reg | Kortney Paul | C | 21 | 6-1 | 190 | R | R | A+ | | University of Arkansas | |
| 49 | 1355 | June-Reg | Chris Stewart | p | | | | | | A+ | | University of Memphis | |
| 50 | 1378 | June-Reg | Edward Kehrli | p | | | | | | A- | | Pace University | |
| 51 | 1399 | June-Reg | Alfred Hughes | 1B | | | | | | - | | Vernon College | |
| 52 | 1419 | June-Reg | Brad Gore | p | | | | | | - | | Oklahoma State University | |
| 53 | 1440** | June-Reg | Matt Leach | p | | | | | | Rookie | | Long Island University-Brooklyn Campus | |
| 54 | 1461 | June-Reg | Josh Bradford | p | 19 | 6-5 | 185 | R | R | AAA | | Hutchinson Community College | |
| 55 | 1481 | June-Reg | Keith Bradley | SS | | | | | | - | | Connors State College | |
| 56 | 1500 | June-Reg | Matt Johnson | 2B | | | | | | - | | South Park (South Park,PA) | |
| 57 | 1519 | June-Reg | Tim Bradley | p | | | | | | - | | Dixie State College of Utah | |
| 58 | 1536 | June-Reg | Anthony Fisher | of | 18 | 6-1 | 180 | R | R | - | | Cretin-Derham Hall (St. Paul,MN) | |