| 1 | 24 | June-Reg | Joe Kucharski | P | | | | | | AAA | | University of South Carolina | |
| 2 | 52** | June-Reg | Dave Otto | P | 17 | 6-7 | 210 | L | L | MLB | 1987-1994 | Elk Grove (Elk Grove,IL) | |
| 3 | 78 | June-Reg | John Habyan | P | 19 | 6-1 | 195 | R | R | MLB | 1985-1996 | St. John Baptist (West Islip,NY) | |
| 4 | 104 | June-Reg | Manuel Miranda | 2B | | | | | | A+ | | Sweetwater (National City,CA) | |
| 5 | 130 | June-Reg | Ken Gerhart | OF | 21 | 6-0 | 190 | R | R | MLB | 1986-1988 | Middle Tennessee State University | |
| 6 | 156 | June-Reg | Edward Mason | P | 17 | 6-2 | 240 | R | R | - | | Boone (Orlando,FL) | |
| 7 | 182** | June-Reg | Rick Lockwood | 3B | | | | | | AAA | | Georgia Tech | |
| 8 | 208 | June-Reg | Roger Wilson | P | | | | | | AAA | | Poly (Long Beach,CA) | |
| 9 | 234 | June-Reg | Eric Bell | P | 18 | 6-0 | 165 | L | L | MLB | 1985-1993 | Beyer (Modesto,CA) | |
| 10 | 260** | June-Reg | Walt Weiss | SS | 18 | 6-0 | 175 | B | R | MLB | 1987-2000 | Suffern (Suffern,NY) | |
| 11 | 286 | June-Reg | Billy Ripken | P-SS | 17 | 6-1 | 190 | R | R | MLB | 1987-1998 | Aberdeen (Aberdeen,MD) | |
| 12 | 311** | June-Reg | Randy Wilson | P | | | | | | A- | | University of South Florida | |
| 13 | 337 | June-Reg | Gerry Melillo | C | | | | | | A+ | | Eckerd College | |
| 14 | 363 | June-Reg | Ron Salcedo | 3B | | | | | | AAA | | Arizona State University | |
| 15 | 389 | June-Reg | Mike Vanderburg | OF | | | | | | A+ | | Cal State Fullerton | |
| 16 | 415** | June-Reg | Scott Lawrence | SS | | | | | | A+ | | Chopticon (Hollywood,MD) | |
| 17 | 441** | June-Reg | Marty Lanoux | 2B | | 5-8 | 170 | L | R | AAA | | Orange Park (Orange Park,FL) | |
| 18 | 467 | June-Reg | Chris Holmes | C | | | | | | A+ | | Durant (Durant,OK) | |
| 19 | 493 | June-Reg | Steve Spalt | SS | | | | | | A+ | | Patterson (Baltimore,MD) | |
| 20 | 518** | June-Reg | Eric Hohn | p | | | | | | A | | Butler (Butler,PA) | |
| 21 | 543 | June-Reg | Jim Traber | 1B | 20 | 6-0 | 208 | L | L | MLB | 1984-1989 | Oklahoma State University | |
| 22 | 568 | June-Reg | Greg Beucher | SS | | | | | | Rookie | | Connellsville (Connellsville,PA) | |
| 23 | 593 | June-Reg | Bill Cowgill | OF | | | | | | Rookie | | North Caroline (Ridgely,MD) | |
| 24 | 618 | June-Reg | Carlos Concepcion | p | | | | | | AAA | | | |
| 25 | 643** | June-Reg | Chris Courtright | OF | | | | | | - | | Highland Regional (Blackwood,NJ) | |
| 26 | 668 | June-Reg | Matthew Merriman | 3B | | | | | | - | | Roswell (Roswell,GA) | |
| 27 | 692 | June-Reg | Gene Dudek | 2B | | | | | | Rookie | | University at Buffalo | |
| 28 | 715** | June-Reg | Jeff McKnight | SS | 19 | 6-0 | 188 | B | R | MLB | 1989-1994 | University of Arkansas-Fort Smith | |
| 29 | 737 | June-Reg | Michael Cain | 2B | | | | | | A+ | | Jackson State University | |
| 1 | 24** | June-Sec | Brad Arnsberg | P | 18 | 6-4 | 215 | R | R | MLB | 1986-1992 | Merced College | |
| 2 | 47** | June-Sec | Troy Afenir | C | 18 | 6-4 | 200 | R | R | MLB | 1987-1992 | Palomar College | |
| 1 | 23 | Jan-Reg | Jeff Doerr | 3B | | | | | | AA | | College of San Mateo | |
| 2 | 49 | Jan-Reg | Dennis Tiefenthaler | SS | | | | | | AA | | Yavapai College | |
| 3 | 75 | Jan-Reg | Robert Rase | P | | | | | | - | | Indian River State College | |
| 4 | 101** | Jan-Reg | Romy Cucjen | IF | | | | | | AAA | | Southwestern Community College | |
| 5 | 127 | Jan-Reg | Robert Karialainen | 1B-OF | | | | | | - | | Florida Community College | |
| 6 | 153 | Jan-Reg | Scott Russell | OF | | | | | | - | | College of Southern Idaho | |
| 7 | 178 | Jan-Reg | Scott Hurst | P | | | | | | A- | | Florida Community College | |
| 8 | 203 | Jan-Reg | Thomas Banner | 3B | | | | | | A+ | | University of New Haven | |
| 9 | 224** | Jan-Reg | Rick Hopkins | 2B | | | | | | AA | | Orange County Community College | |
| 1 | 5 | Jan-Sec | John Leonard | P | | | | | | Rookie | | | |
| 2 | 30** | Jan-Sec | Manny Mantrana | SS | | 6-0 | 170 | R | R | A+ | | Miami-Dade College | |
