| 1 | 4 | June-Reg | Terry Blocker | OF | 21 | 6-2 | 195 | L | L | MLB | 1985-1989 | Tennessee State University | $127,500 |
| 2 | 38 | June-Reg | John Christensen | OF | 20 | 6-0 | 180 | R | R | MLB | 1984-1988 | Cal State Fullerton | |
| 4 | 81 | June-Reg | Dave Cochrane | P-3B | 18 | 6-2 | 180 | B | R | MLB | 1986-1992 | Troy (Fullerton,CA) | |
| 5 | 107 | June-Reg | Steve Phillips | SS | | | | | | AA | | De La Salle Collegiate (Warren,MI) | |
| 6 | 133 | June-Reg | Ken Harris | SS-OF | | | | | | A+ | | University of La Verne | |
| 7 | 159 | June-Reg | Jeff Keeter | P | | | | | | - | | Florida State University | |
| 8 | 185 | June-Reg | Mark Carreon | OF | 17 | 6-0 | 195 | R | L | MLB | 1987-1996 | Salpointe Catholic (Tucson,AZ) | |
| 9 | 211 | June-Reg | Rich Webster | P | | | | | | A+ | | University of Memphis | |
| 10 | 237** | June-Reg | Albert Candelaria | P | | | | | | A+ | | Yerba Buena (San Jose,CA) | |
| 11 | 263 | June-Reg | Steve Walker | P | 18 | 6-1 | 190 | R | R | AA | | Mount Carmel (San Diego,CA) | |
| 12 | 289** | June-Reg | Roger Clemens | P | 18 | 6-4 | 230 | R | R | MLB | 1984-2007 | San Jacinto College | |
| 13 | 315 | June-Reg | Lenny Dykstra | OF | 18 | 5-10 | 185 | L | L | MLB | 1985-1996 | Garden Grove (Garden Grove,CA) | |
| 14 | 341** | June-Reg | Gary Kanwisher | p | | | | | | A+ | | Pascack (Hillsdale,NJ) | |
| 15 | 367 | June-Reg | Larry McNutt | 1B | | | | | | A+ | | Jackson State University | |
| 16 | 393 | June-Reg | Matt Woellert | p | 17 | | | | | - | | Moeller (Cincinnati,OH) | |
| 17 | 419** | June-Reg | Bryan Olden | 2B | | | | | | A- | | Beaverton (Beaverton,OR) | |
| 18 | 445 | June-Reg | Ed Garton | 3B | | | | | | A- | | University of Iowa | |
| 19 | 471 | June-Reg | Lou Thornton | 3B | 18 | 6-2 | 185 | L | R | MLB | 1985-1990 | Jefferson Davis (Montgomery,AL) | |
| 20 | 497 | June-Reg | Mark Boyd | C | | | | | | A+ | | McEachern (Powder Springs,GA) | |
| 21 | 523 | June-Reg | Steve Staton | p | | | | | | - | | Long Beach State University | |
| 22 | 549 | June-Reg | Matthew Fitts | p | | | | | | Rookie | | Lompoc (Lompoc,CA) | |
| 23 | 574 | June-Reg | Kurt Griffon | OF | | | | | | - | | Plaquemine (Plaquemine,LA) | |
| 24 | 599 | June-Reg | Bob Costello | C | 20 | 6-3 | 215 | R | R | A | | New York Institute of Technology | |
| 25 | 624 | June-Reg | Russell Orrick | OF | 19 | | | L | L | Rookie | | Vintage (Napa,CA) | |
| 26 | 647 | June-Reg | Randy Hoffman | OF | | | | | | Rookie | | Southeastern Louisiana University | |
| 27 | 670 | June-Reg | James Oates | p | | | | | | A | | Huntington University | |
| 28 | 692 | June-Reg | Joe Licata | OF-3B | | | | | | A- | | Florida State University | |
| 29 | 714 | June-Reg | Gary Heien | p | 18 | 6-0 | 187 | R | R | - | | O'Fallon (O'Fallon,IL) | |
| 30 | 734 | June-Reg | Michael Franks | 2B | | | | | | A- | | Loyola Marymount University | |
| 31 | 752 | June-Reg | Mike Harlander | p | | | | | | A- | | University of Nebraska | |
| 32 | 769 | June-Reg | Steve DeMattles | C | | | | | | A- | | Ithaca College | |
| 33 | 785** | June-Reg | Luis Medina | OF | 18 | 6-4 | 200 | R | L | MLB | 1988-1991 | Warren (Downey,CA) | |
| 34 | 799 | June-Reg | Bruce Kastelic | SS | | | | | | AA | | Oklahoma State University | |
| 35 | 811 | June-Reg | Lou Martinez | C | 4 | 6-0 | 175 | R | R | AAA | - | DeWitt Clinton (Bronx,NY) | |
| 36 | 820 | June-Reg | Darrell Rodgers | p | | | | | | AA | | Eisenhower (Lawton,OK) | |
| 37 | 829 | June-Reg | Larry Czeszewski | C | | | | | | A | | Midwestern State University | |
| 38 | 836 | June-Reg | Scott Holiday | Of | | | | | | - | | Middle Tennessee State University | |
| 1 | 14 | June-Sec | John Felce | OF | | | | | | - | | College of the Canyons | |
| 2 | 39 | June-Sec | Gail Arnold | P | | | | | | A- | | Brigham Young University | |
| 3 | 60** | June-Sec | Greg Griffin | OF | | | | | | AA | | | |
| 4 | 71 | June-Sec | Kevin Slwinski | OF | | | | | | - | | Orange County Community College | |
| 5 | 76 | June-Sec | Greg Cary | P | | | | | | - | | Chabot College | |
| 1 | 3 | Jan-Reg | Randy Milligan | OF | 19 | 6-2 | 225 | R | R | MLB | 1987-1994 | San Diego Mesa College | |
| 2 | 29 | Jan-Reg | Steve Ray | P | | | | | | A+ | | Southwestern Community College | |
| 3 | 55 | Jan-Reg | Rey Tolentino | P | | | | | | - | | Chaffey College | |
| 4 | 81** | Jan-Reg | Dodd Hook | 1B | | | | | | - | | Indian Hills Community College-Centerville | |
| 5 | 107 | Jan-Reg | Jim Cazet | SS | | | | | | Rookie | | Modesto Junior College | |
| 6 | 133** | Jan-Reg | Greg Cary | P | | | | | | - | | Chabot College | |
| 7 | 158 | Jan-Reg | Craig Walter | P | 19 | 5-11 | 175 | R | R | A | | Waldorf College | |
| 8 | 183 | Jan-Reg | Tim Hampton | P | | | | | | A+ | | Modesto Junior College | |
| 9 | 202 | Jan-Reg | Brian Pate | iF-Of | | | | | | A+ | | Columbia State Community College | |
| 10 | 220 | Jan-Reg | William Bankhead | 3B | | | | | | - | | Green River Community College | |
| 11 | 237 | Jan-Reg | Roger Lee | OF-1B | | | | | | - | | Garden City Community College | |
| 12 | 250** | Jan-Reg | Greg Shirley | C | | | | | | - | | Faulkner University | |
| 13 | 262 | Jan-Reg | Robert Smith | iF-Of | | | | | | A | | | |
| 1 | 9 | Jan-Sec | Herm Winningham | OF | 19 | 5-11 | 175 | L | R | MLB | 1984-1992 | Georgia Perimeter College | |
| 2 | 35** | Jan-Sec | Billy Irions | P | | | | | | A | | Seminole Community College | |
| 3 | 60** | Jan-Sec | Nick Esposito | P | | | | | | A+ | | Los Medanos College | |
