| 1 | 18 | June-Reg | Glenn Wilson | 3B | 21 | 6-1 | 190 | R | R | MLB | 1982-1993 | Sam Houston State University | |
| 2 | 44 | June-Reg | Charles Reese | SS | | | | | | - | | | |
| 3 | 70 | June-Reg | Robert Casanovas | P | | | | | | - | | Mahwah (Mahwah,NJ) | |
| 4 | 96** | June-Reg | Bob Sebra | P | 18 | 6-2 | 200 | R | R | MLB | 1985-1990 | Gloucester Catholic (Gloucester,NJ) | |
| 5 | 122 | June-Reg | Lawrence Gilmore | 1B | | | | | | A | | West Covina (West Covina,CA) | |
| 6 | 148 | June-Reg | Mark Smith | OF | | | | | | AAA | | Fairfield College Prep (Fairfield,CT) | |
| 7 | 174 | June-Reg | Stan Younger | OF | | | | | | AAA | | Brigham Young University | |
| 8 | 200 | June-Reg | Stine Poole | C | | | | | | AAA | | University of the Pacific | |
| 9 | 226 | June-Reg | Homer Moncrief | P | | | | | | AA | | Jackson State University | |
| 10 | 252 | June-Reg | Chuck Hensley | P | 21 | 6-3 | 190 | L | L | MLB | 1986-1986 | University of California | |
| 11 | 278 | June-Reg | Dwight Lowry | C | 22 | 6-3 | 210 | L | R | MLB | 1984-1988 | University of North Carolina | |
| 12 | 304 | June-Reg | Carl Burns | 1B | | | | | | Rookie | | Chadsey (Detroit,MI) | |
| 13 | 330 | June-Reg | Kevin Perrett | C | | | | | | Rookie | | Madison (San Diego,CA) | |
| 14 | 356 | June-Reg | Michael Jones | SS | | | | | | Rookie | | Rome Free Academy (Rome,NY) | |
| 15 | 382 | June-Reg | Rondal Rollin | OF | | | | | | AAA | | Cal State Northridge | |
| 16 | 408 | June-Reg | Howard Carter | OF | | | | | | A+ | | Tuskegee University | |
| 17 | 434 | June-Reg | Thomas Merkle | OF | | | | | | Rookie | | Saginaw Valley State University | |
| 18 | 460** | June-Reg | Jeff Morrison | p | | | | | | - | | University of Miami | |
| 19 | 486 | June-Reg | Norman Michaud | OF | | | | | | Rookie | | Northeastern University | |
| 20 | 512 | June-Reg | David Simononis | OF | | | | | | Rookie | | Penn State University | |
| 21 | 537 | June-Reg | James Clark | p | | | | | | A+ | | Saint Peter's College | |
| 22 | 562 | June-Reg | Gary Nutter | p | | | | | | AA | | Eckerd College | |
| 23 | 587 | June-Reg | Willie Ward | 1B | | | | | | Rookie | | Barringer (Newark,NJ) | |
| 24 | 611 | June-Reg | William Nash | OF | | | | | | Rookie | | Chadsey (Detroit,MI) | |
| 25 | 634** | June-Reg | Mark Friedly | p | | | | | | - | | John Glenn (Norwalk,CA) | |
| 26 | 655 | June-Reg | David Hage | SS | | | | | | - | | Amsterdam (Amsterdam,NY) | |
| 27 | 674 | June-Reg | Robert Vavrock | p | 21 | | | | | A+ | | Cal Poly | |
| 28 | 692** | June-Reg | Walter Faber | p | | | | | | A+ | | Grand Rapids Community College | |
| 29 | 708 | June-Reg | Robell Ruffus | p | | | | | | A | | Monmouth College | |
| 30 | 724 | June-Reg | Ron Mathis | p | 21 | 6-0 | 175 | R | R | MLB | 1985-1987 | University of Missouri | |
| 31 | 739 | June-Reg | Mark Dacko | p | | | | | | AAA | | James Madison University | |
| 32 | 752** | June-Reg | David Kopf | p | | | | | | AAA | | Clarence S. Kimball (Royal Oak,MI) | |
| 33 | 765** | June-Reg | Mike Tanzi | p | | | | | | AA | | Florida Southern College | |
| 34 | 776 | June-Reg | Mark Recker | p | | | | | | - | | Oakland University | |
| 35 | 786 | June-Reg | Mark Fellows | p | | | | | | AA | | Central Michigan University | |
| 36 | 795 | June-Reg | George Foussianes | SS | | | | | | AAA | | University of Michigan | |
| 1 | 14 | June-Sec | Joseph McCarthy | OF | | | | | | - | | University of South Carolina | |
| 2 | 38 | June-Sec | Mitch Seoane | 2B | | | | | | AA | | Hillsborough Community College | |
| 1 | 17 | Jan-Reg | Mike Laga | 1B | 20 | 6-2 | 210 | L | L | MLB | 1982-1990 | Bergen Community College | |
| 2 | 43** | Jan-Reg | Paul Huyck | P | | | | | | A+ | | Yavapai College | |
| 3 | 69 | Jan-Reg | Kevin Young | OF | | | | | | A | | Valencia Community College | |
| 4 | 95 | Jan-Reg | Guy Hubert | SS | | | | | | A+ | | Delgado Community College | |
| 5 | 120** | Jan-Reg | Randy Hunt | OF | 20 | 6-0 | 185 | R | R | MLB | 1985-1986 | Chattahoochee Valley Community College | |
| 6 | 145 | Jan-Reg | John Engen | P | | | | | | - | | University of Minnesota-Duluth | |
| 7 | 167 | Jan-Reg | James Doleski | P | | | | | | - | | Northern Virginia Community College | |
| 8 | 189 | Jan-Reg | Kenneth Merritt | C | | | | | | A- | | Yavapai College | |
| 1 | 16 | Jan-Sec | John Moller | P | | | | | | A+ | | | |
| 2 | 41 | Jan-Sec | Nick O'Connor | P | | | | | | AA | | University of the Cumberlands | |
